Wall clock time and date at job start Mon Mar 30 2020 02:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48498 * 109.47295 * 239.99839 * 3 2 1 5 5 H 1.48500 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46845 * 119.99935 * 3 2 1 7 7 C 1.37875 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99955 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46953 * 60.00279 * 9 7 2 11 11 O 1.42895 * 109.47147 * 300.00764 * 9 7 2 12 12 C 1.50697 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.33995 * 126.90478 * 95.02555 * 12 9 7 14 14 O 1.34451 * 110.15688 * 179.97438 * 13 12 9 15 15 C 1.34804 * 110.88460 * 0.02562 * 14 13 12 16 16 C 1.38942 * 133.49240 * 180.02562 * 15 14 13 17 17 C 1.37847 * 119.82164 * 180.02562 * 16 15 14 18 18 C 1.38744 * 120.68290 * 359.97438 * 17 16 15 19 19 C 1.36742 * 120.41728 * 0.02562 * 18 17 16 20 20 C 1.39403 * 119.71691 * 359.67841 * 19 18 17 21 21 H 0.97003 * 119.99476 * 359.97438 * 1 2 3 22 22 H 0.96705 * 114.00010 * 299.99569 * 11 9 7 23 23 H 1.08003 * 124.92356 * 0.02562 * 13 12 9 24 24 H 1.08003 * 120.09004 * 359.97368 * 16 15 14 25 25 H 1.07997 * 119.66288 * 179.97438 * 17 16 15 26 26 H 1.07993 * 119.79382 * 180.02562 * 18 17 16 27 27 H 1.08001 * 120.14136 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 0.4297 -2.5750 1.1664 12 6 2.2302 -3.6446 -0.0005 13 6 2.6817 -4.3172 1.0668 14 8 3.5437 -5.2741 0.6808 15 6 3.6965 -5.2714 -0.6585 16 6 4.4527 -6.0384 -1.5363 17 6 4.3956 -5.7868 -2.8904 18 6 3.5891 -4.7739 -3.3889 19 6 2.8371 -4.0076 -2.5421 20 6 2.8771 -4.2513 -1.1702 21 1 -0.4849 0.8401 0.0004 22 1 0.9221 -2.5299 1.9975 23 1 2.3942 -4.1199 2.0890 24 1 5.0841 -6.8290 -1.1586 25 1 4.9847 -6.3843 -3.5703 26 1 3.5549 -4.5895 -4.4525 27 1 2.2105 -3.2205 -2.9351 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128821460.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:23 Heat of formation + Delta-G solvation = -46.659881 kcal Electronic energy + Delta-G solvation = -14070.543866 eV Core-core repulsion = 11565.790066 eV Total energy + Delta-G solvation = -2504.753800 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.28061 -38.69923 -37.91298 -34.34734 -33.61759 -31.32481 -30.25026 -28.78346 -25.11387 -24.11003 -23.09254 -20.97072 -19.16774 -18.25746 -18.00496 -16.94017 -16.76434 -16.51947 -16.06661 -15.18781 -14.91369 -14.75650 -14.48752 -13.54004 -13.31625 -13.15823 -13.05289 -12.84015 -12.66244 -12.17478 -11.86194 -11.47476 -10.93999 -10.66480 -10.38430 -9.53129 -8.99376 -8.17044 -6.45380 0.05846 0.46079 1.37600 1.40049 1.47694 1.55809 1.95561 2.37423 2.83882 3.05578 3.67967 3.78009 4.10744 4.16814 4.25017 4.47141 4.56038 4.64939 4.75411 4.94352 5.32824 5.41448 5.47899 5.54788 5.60302 5.68129 5.83509 5.99262 6.29274 6.63951 7.25372 7.43883 8.85382 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.034544 B = 0.009089 C = 0.008122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.376551 B = 3079.947074 C = 3446.781405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.031 3.969 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.574 4.574 8 H 0.050 0.950 9 C 0.297 3.703 10 H 0.027 0.973 11 O -0.573 6.573 12 C -0.196 4.196 13 C -0.012 4.012 14 O -0.202 6.202 15 C 0.023 3.977 16 C -0.113 4.113 17 C -0.088 4.088 18 C -0.135 4.135 19 C -0.092 4.092 20 C -0.151 4.151 21 H 0.265 0.735 22 H 0.360 0.640 23 H 0.231 0.769 24 H 0.159 0.841 25 H 0.178 0.822 26 H 0.157 0.843 27 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.872 -9.581 -3.449 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.611 4.611 8 H 0.068 0.932 9 C 0.239 3.761 10 H 0.045 0.955 11 O -0.377 6.377 12 C -0.198 4.198 13 C -0.076 4.076 14 O -0.104 6.104 15 C -0.024 4.024 16 C -0.131 4.131 17 C -0.106 4.106 18 C -0.152 4.152 19 C -0.110 4.110 20 C -0.152 4.152 21 H 0.074 0.926 22 H 0.206 0.794 23 H 0.247 0.753 24 H 0.177 0.823 25 H 0.195 0.805 26 H 0.175 0.825 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.356 -9.708 -3.735 13.342 hybrid contribution 0.233 1.379 0.486 1.480 sum 8.589 -8.329 -3.249 12.398 Atomic orbital electron populations 1.70189 1.07542 1.27778 1.47858 1.25869 0.95513 1.02705 0.93110 0.85589 0.78412 0.78363 0.79110 1.19633 1.20430 1.19113 1.21707 0.92905 0.91720 1.54787 0.93218 1.17424 0.85657 0.87890 0.85116 0.95522 1.86548 1.38719 1.96390 1.16078 1.22567 1.03527 1.01006 0.92701 1.23900 0.93320 0.89935 1.00439 1.83915 1.55407 1.49742 1.21382 1.20214 1.00825 0.99339 0.82058 1.20369 1.00506 1.00638 0.91610 1.21396 0.98161 0.97297 0.93736 1.21137 0.97148 0.96132 1.00825 1.20553 0.99691 0.99676 0.91088 1.20193 1.00950 0.98718 0.95323 0.92610 0.79387 0.75288 0.82344 0.80460 0.82520 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.52 12.84 21.45 0.28 -53.24 15 2 C 0.03 1.74 5.40 84.65 0.46 2.20 15 3 Si 0.96 43.61 29.54 68.60 2.03 45.64 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 7 C -0.57 -32.40 8.75 25.60 0.22 -32.18 15 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 15 9 C 0.30 15.96 3.36 29.10 0.10 16.06 15 10 H 0.03 1.63 8.14 -2.39 -0.02 1.61 15 11 O -0.57 -29.98 12.53 -148.98 -1.87 -31.85 15 12 C -0.20 -9.05 5.42 -18.60 -0.10 -9.15 15 13 C -0.01 -0.48 11.31 66.85 0.76 0.27 15 14 O -0.20 -7.56 10.58 -8.90 -0.09 -7.65 15 15 C 0.02 0.83 7.42 22.99 0.17 1.00 15 16 C -0.11 -3.06 10.07 22.35 0.23 -2.84 15 17 C -0.09 -2.02 10.01 22.30 0.22 -1.79 15 18 C -0.13 -3.67 9.98 22.04 0.22 -3.45 15 19 C -0.09 -3.45 10.05 22.20 0.22 -3.23 15 20 C -0.15 -6.39 6.38 -20.21 -0.13 -6.51 15 21 H 0.26 14.88 8.31 -92.71 -0.77 14.11 15 22 H 0.36 15.90 8.12 -74.05 -0.60 15.30 15 23 H 0.23 7.08 7.42 -2.91 -0.02 7.06 15 24 H 0.16 3.16 8.06 -2.91 -0.02 3.14 15 25 H 0.18 2.33 8.06 -2.91 -0.02 2.30 15 26 H 0.16 3.14 8.06 -2.91 -0.02 3.12 15 27 H 0.11 4.40 8.06 -2.91 -0.02 4.37 15 Total: -1.00 -70.05 246.93 3.30 -66.75 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.59 Total: 19.97 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 2.37 Total: -39.61 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.28 Total: -53.24 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -1.96 Total: -39.50 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.05 3.30 -66.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128821460.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.086 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds