Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86801 * 119.99876 * 2 1 4 4 H 1.48503 * 109.46784 * 274.98770 * 3 2 1 5 5 H 1.48498 * 109.47157 * 34.98851 * 3 2 1 6 6 H 1.48504 * 109.46912 * 154.98997 * 3 2 1 7 7 C 1.40045 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99959 * 186.24717 * 7 2 1 9 9 C 1.41431 * 119.99572 * 6.24367 * 7 2 1 10 10 C 1.40994 * 120.28134 * 173.74545 * 9 7 2 11 11 C 1.38376 * 117.83086 * 179.97438 * 10 9 7 12 12 C 1.38922 * 118.17951 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.84936 * 180.02562 * 12 11 10 14 14 F 1.39902 * 109.46734 * 184.97343 * 13 12 11 15 15 F 1.39897 * 109.47354 * 304.97259 * 13 12 11 16 16 F 1.39898 * 109.47084 * 64.98104 * 13 12 11 17 17 N 1.32238 * 120.29244 * 359.97438 * 12 11 10 18 18 N 1.28356 * 122.40918 * 359.97438 * 17 12 11 19 19 H 0.96997 * 120.00102 * 359.97438 * 1 2 3 20 20 H 1.08000 * 121.08813 * 0.02562 * 10 9 7 21 21 H 1.08001 * 120.90710 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3834 2.1072 -1.3948 5 1 1.4955 2.6199 0.8028 6 1 3.5878 1.4120 0.5919 7 6 2.0077 -1.2128 -0.0005 8 1 3.0829 -1.2156 0.1012 9 6 1.3068 -2.4339 -0.1343 10 6 2.0119 -3.6475 -0.2679 11 6 1.2754 -4.8120 -0.3949 12 6 -0.1105 -4.7163 -0.3837 13 6 -0.9494 -5.9608 -0.5188 14 9 -2.3007 -5.6062 -0.5946 15 9 -0.5816 -6.6473 -1.6809 16 9 -0.7451 -6.7839 0.5937 17 7 -0.6966 -3.5380 -0.2542 18 7 -0.0302 -2.4476 -0.1342 19 1 -0.4850 0.8400 0.0004 20 1 3.0917 -3.6677 -0.2701 21 1 1.7646 -5.7692 -0.4997 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132519125.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = -126.603572 kcal Electronic energy + Delta-G solvation = -14247.193831 eV Core-core repulsion = 11093.576328 eV Total energy + Delta-G solvation = -3153.617503 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -51.02253 -48.54626 -48.50814 -40.93659 -36.12364 -33.60679 -33.19168 -29.09951 -26.63337 -24.72419 -23.45904 -20.06917 -19.42641 -19.33455 -19.14724 -17.71571 -16.83794 -15.86310 -15.55684 -15.32510 -15.05313 -15.00254 -14.98559 -14.70883 -14.69895 -14.34049 -13.35290 -13.11630 -12.99410 -12.91646 -12.01827 -11.60529 -11.41070 -10.79068 -10.41846 -9.93933 -8.66607 -6.94867 0.36718 0.53905 1.41458 1.50051 1.59387 1.75592 2.14679 2.52191 2.83749 3.22750 3.32738 3.69845 4.12434 4.24699 4.39394 4.50777 5.00436 5.04838 5.36220 5.49346 6.03008 6.32663 6.51548 8.14794 8.55812 Molecular weight = 218.04amu Principal moments of inertia in cm(-1) A = 0.067113 B = 0.007899 C = 0.007398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.103777 B = 3544.038037 C = 3783.874468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.011 3.989 3 Si 1.005 2.995 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.242 1.242 7 C -0.405 4.405 8 H 0.120 0.880 9 C 0.141 3.859 10 C -0.203 4.203 11 C -0.072 4.072 12 C -0.197 4.197 13 C 0.547 3.453 14 F -0.180 7.180 15 F -0.177 7.177 16 F -0.179 7.179 17 N -0.213 5.213 18 N -0.296 5.296 19 H 0.293 0.707 20 H 0.158 0.842 21 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 -3.281 -0.593 5.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.214 4.214 3 Si 0.823 3.177 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.165 1.165 7 C -0.437 4.437 8 H 0.138 0.862 9 C 0.016 3.984 10 C -0.232 4.232 11 C -0.097 4.097 12 C -0.344 4.344 13 C 0.491 3.509 14 F -0.162 7.162 15 F -0.159 7.159 16 F -0.161 7.161 17 N -0.063 5.063 18 N -0.153 5.153 19 H 0.105 0.895 20 H 0.175 0.825 21 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.870 -2.365 -0.492 3.752 hybrid contribution 1.077 -0.520 -0.131 1.203 sum 3.947 -2.885 -0.624 4.929 Atomic orbital electron populations 1.70148 1.09638 1.31156 1.24969 1.27403 0.95802 1.05806 0.92345 0.84836 0.79195 0.74078 0.79591 1.18599 1.19262 1.16524 1.20383 0.96548 0.89294 1.37434 0.86233 1.20708 0.91372 0.95198 0.91099 1.22381 1.01487 0.91915 1.07461 1.21621 0.92094 1.00400 0.95584 1.21984 0.93991 0.94400 1.24027 1.17484 0.77503 0.82522 0.73411 1.93135 1.34965 1.92058 1.96010 1.93149 1.91495 1.81425 1.49832 1.93153 1.94855 1.74551 1.53541 1.72600 1.35075 0.95718 1.02896 1.74383 1.07119 1.12926 1.20897 0.89532 0.82481 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.80 11.53 21.84 0.25 -37.54 14 2 C 0.01 0.52 5.49 85.29 0.47 0.99 14 3 Si 1.00 33.28 29.56 68.60 2.03 35.31 14 4 H -0.26 -8.45 7.11 99.48 0.71 -7.74 14 5 H -0.27 -8.67 7.11 99.48 0.71 -7.96 14 6 H -0.24 -7.38 7.11 99.48 0.71 -6.67 14 7 C -0.41 -19.39 9.16 23.49 0.22 -19.18 14 8 H 0.12 4.94 7.85 -2.91 -0.02 4.92 14 9 C 0.14 7.33 6.62 40.32 0.27 7.60 14 10 C -0.20 -8.81 9.96 22.98 0.23 -8.58 14 11 C -0.07 -2.98 9.72 22.47 0.22 -2.76 14 12 C -0.20 -9.17 6.35 42.66 0.27 -8.90 14 13 C 0.55 22.05 3.32 71.23 0.24 22.28 14 14 F -0.18 -7.62 16.87 44.97 0.76 -6.87 14 15 F -0.18 -6.49 17.17 44.97 0.77 -5.72 14 16 F -0.18 -6.68 17.29 44.97 0.78 -5.90 14 17 N -0.21 -11.65 10.90 -47.29 -0.52 -12.17 14 18 N -0.30 -17.00 9.12 -51.92 -0.47 -17.48 14 19 H 0.29 13.37 8.29 -92.71 -0.77 12.60 14 20 H 0.16 5.55 8.06 -2.91 -0.02 5.52 14 21 H 0.16 5.14 8.06 -2.91 -0.02 5.11 14 Total: -1.00 -59.92 216.65 6.79 -53.14 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.28 Total: 5.78 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 1.91 Total: -8.54 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -0.74 Total: -67.19 kcal Atomic # 9 Polarization: -20.80 SS G_CDS: 2.31 Total: -18.49 kcal Atomic # 14 Polarization: 33.28 SS G_CDS: 2.03 Total: 35.31 kcal Total: -59.92 6.79 -53.14 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132519125.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.467 kcal (2) G-P(sol) polarization free energy of solvation -59.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds