Wall clock time and date at job start Mon Mar 30 2020 02:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47158 * 111.00095 * 2 1 4 4 C 1.52896 * 108.50113 * 165.28860 * 3 2 1 5 5 C 1.50721 * 109.95922 * 50.36477 * 4 3 2 6 6 C 1.38673 * 118.48798 * 163.27343 * 5 4 3 7 7 C 1.38034 * 120.34639 * 179.81617 * 6 5 4 8 8 C 1.38260 * 119.83060 * 0.02562 * 7 6 5 9 9 C 1.38013 * 119.86691 * 0.06954 * 8 7 6 10 10 C 1.37841 * 121.66138 * 343.23039 * 5 4 3 11 11 C 1.46638 * 110.99825 * 237.01969 * 2 1 3 12 12 H 1.09000 * 109.29646 * 55.61786 * 11 2 1 13 13 C 1.50693 * 109.29988 * 296.03638 * 11 2 1 14 14 H 1.08003 * 120.00308 * 296.70521 * 13 11 2 15 15 C 1.37886 * 120.00011 * 116.71060 * 13 11 2 16 16 N 1.31513 * 119.99454 * 6.36484 * 15 13 11 17 17 Si 1.86802 * 120.00085 * 186.36749 * 15 13 11 18 18 H 1.48497 * 109.46943 * 59.99781 * 17 15 13 19 19 H 1.48494 * 109.46782 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46936 * 299.99983 * 17 15 13 21 21 H 1.09001 * 109.47357 * 182.98110 * 1 2 3 22 22 H 1.09007 * 109.47283 * 302.97628 * 1 2 3 23 23 H 1.08995 * 109.47337 * 62.97551 * 1 2 3 24 24 H 1.09004 * 109.63133 * 284.99398 * 3 2 1 25 25 H 1.08997 * 109.63296 * 45.38517 * 3 2 1 26 26 H 1.09001 * 109.38952 * 170.51152 * 4 3 2 27 27 H 1.08998 * 109.39546 * 290.21593 * 4 3 2 28 28 H 1.07995 * 119.83085 * 359.84471 * 6 5 4 29 29 H 1.08006 * 120.08306 * 180.02562 * 7 6 5 30 30 H 1.08000 * 120.06760 * 180.09233 * 8 7 6 31 31 H 1.08000 * 119.81006 * 179.97438 * 9 8 7 32 32 H 0.96997 * 119.99660 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3738 0.0000 4 6 3.4795 1.3242 0.3682 5 6 4.1890 0.3087 -0.4903 6 6 5.5729 0.3569 -0.5647 7 6 6.2620 -0.5569 -1.3365 8 6 5.5689 -1.5249 -2.0394 9 6 4.1915 -1.5724 -1.9675 10 6 3.4973 -0.6546 -1.1928 11 6 1.9944 -0.7452 -1.1484 12 1 1.5811 -0.3294 -2.0673 13 6 1.5901 -2.1921 -1.0305 14 1 1.9470 -2.7868 -0.2026 15 6 0.7645 -2.7568 -1.9796 16 7 0.4313 -2.0724 -3.0521 17 14 0.1193 -4.4937 -1.7420 18 1 -0.6762 -4.5592 -0.4898 19 1 -0.7408 -4.8641 -2.8943 20 1 1.2618 -5.4381 -1.6526 21 1 -0.3634 -1.0263 0.0534 22 1 -0.3634 0.5594 0.8621 23 1 -0.3634 0.4669 -0.9154 24 1 1.8796 1.8109 -0.9917 25 1 1.4545 1.9741 0.7308 26 1 3.9248 2.3064 0.2097 27 1 3.5829 1.0466 1.4172 28 1 6.1145 1.1129 -0.0157 29 1 7.3399 -0.5157 -1.3911 30 1 6.1043 -2.2426 -2.6432 31 1 3.6509 -2.3287 -2.5173 32 1 -0.1497 -2.4695 -3.7196 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147862043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:07 Heat of formation + Delta-G solvation = 24.620128 kcal Electronic energy + Delta-G solvation = -14722.540479 eV Core-core repulsion = 12454.429368 eV Total energy + Delta-G solvation = -2268.111111 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.16891 -36.23572 -33.26925 -31.61161 -30.58030 -28.50525 -26.23743 -24.77463 -22.52622 -21.61509 -20.88387 -18.51623 -16.54725 -15.75456 -14.99184 -14.66069 -14.45059 -13.84137 -13.32015 -12.95958 -12.76308 -12.35972 -12.09341 -11.86477 -11.51214 -11.22860 -10.95351 -10.85688 -10.77042 -10.41718 -10.28090 -9.88902 -9.50826 -9.23325 -8.62719 -7.93301 -7.68764 -7.09626 -6.10905 -4.16940 2.20638 2.29916 3.27191 3.32256 3.36257 4.33569 4.66244 4.93349 5.32964 5.44299 5.57921 5.77824 5.80984 5.92009 6.07468 6.16243 6.27871 6.39643 6.44099 6.54922 6.61195 6.65781 6.91383 6.93615 7.07764 7.26523 7.34627 7.43144 7.59801 7.80572 7.83430 8.14168 8.32062 8.54923 8.98637 9.46875 10.93064 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027622 B = 0.012478 C = 0.009307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.447079 B = 2243.492682 C = 3007.911973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.535 5.535 3 C 0.047 3.953 4 C -0.066 4.066 5 C -0.096 4.096 6 C -0.134 4.134 7 C -0.146 4.146 8 C -0.139 4.139 9 C -0.089 4.089 10 C -0.031 4.031 11 C 0.220 3.780 12 H 0.060 0.940 13 C -0.491 4.491 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.891 5.891 17 Si 0.894 3.106 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.075 0.925 22 H 0.039 0.961 23 H 0.013 0.987 24 H 0.024 0.976 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 4.354 3.110 7.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.260 5.260 3 C -0.082 4.082 4 C -0.103 4.103 5 C -0.096 4.096 6 C -0.152 4.152 7 C -0.164 4.164 8 C -0.157 4.157 9 C -0.108 4.108 10 C -0.032 4.032 11 C 0.114 3.886 12 H 0.077 0.923 13 C -0.530 4.530 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.200 1.200 21 H 0.094 0.906 22 H 0.058 0.942 23 H 0.031 0.969 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.000 4.107 3.365 7.293 hybrid contribution -0.568 -0.564 -0.684 1.053 sum 4.432 3.542 2.681 6.275 Atomic orbital electron populations 1.22007 0.88200 1.02291 0.97497 1.62656 1.07281 1.10056 1.46039 1.22094 0.94874 0.92408 0.98845 1.20405 0.94711 0.96314 0.98918 1.19668 0.93072 0.97597 0.99271 1.20872 0.93800 0.99786 1.00718 1.20798 0.98568 0.97160 0.99849 1.21020 0.94791 0.99084 1.00823 1.21246 0.92932 0.98438 0.98147 1.20400 0.97846 0.91917 0.93076 1.18552 0.86142 0.94574 0.89288 0.92265 1.20823 1.29148 0.93819 1.09236 0.92160 1.25034 0.95765 0.97999 0.94838 1.69889 1.36048 1.37745 1.09229 0.86620 0.79138 0.84438 0.77712 1.19990 1.21315 1.20002 0.90601 0.94201 0.96869 0.95742 0.92088 0.91998 0.90991 0.87574 0.87551 0.87319 0.85275 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.04 9.32 60.06 0.56 1.60 16 2 N -0.54 -12.13 4.69 -237.80 -1.11 -13.25 16 3 C 0.05 0.89 5.58 -3.74 -0.02 0.87 16 4 C -0.07 -1.18 5.95 -27.93 -0.17 -1.34 16 5 C -0.10 -1.95 5.77 -104.60 -0.60 -2.56 16 6 C -0.13 -2.41 9.66 -39.50 -0.38 -2.79 16 7 C -0.15 -2.55 10.05 -39.65 -0.40 -2.95 16 8 C -0.14 -2.64 10.05 -39.66 -0.40 -3.04 16 9 C -0.09 -2.00 9.07 -39.48 -0.36 -2.36 16 10 C -0.03 -0.73 5.46 -104.63 -0.57 -1.30 16 11 C 0.22 5.51 2.09 -70.20 -0.15 5.37 16 12 H 0.06 1.68 6.90 -51.93 -0.36 1.32 16 13 C -0.49 -13.09 5.94 -34.44 -0.20 -13.29 16 14 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 15 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 16 N -0.89 -24.62 12.61 55.43 0.70 -23.92 16 17 Si 0.89 20.73 29.54 -169.99 -5.02 15.70 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H 0.08 1.76 7.20 -51.93 -0.37 1.39 16 22 H 0.04 0.72 8.04 -51.93 -0.42 0.31 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.02 0.49 8.05 -51.93 -0.42 0.07 16 25 H 0.06 1.02 7.95 -51.93 -0.41 0.61 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.13 3.09 7.33 -52.49 -0.38 2.70 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 262.73 15.07 3.96 3.96 Total: -1.00 -27.86 262.73 -8.71 -36.57 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.45 Total: 1.06 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.79 Total: -20.12 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.42 Total: -37.17 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.86 -8.71 -36.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147862043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.191 kcal (2) G-P(sol) polarization free energy of solvation -27.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds