Wall clock time and date at job start Mon Mar 30 2020 02:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47158 * 111.00095 * 2 1 4 4 C 1.52896 * 108.50113 * 165.28860 * 3 2 1 5 5 C 1.50721 * 109.95922 * 50.36477 * 4 3 2 6 6 C 1.38673 * 118.48798 * 163.27343 * 5 4 3 7 7 C 1.38034 * 120.34639 * 179.81617 * 6 5 4 8 8 C 1.38260 * 119.83060 * 0.02562 * 7 6 5 9 9 C 1.38013 * 119.86691 * 0.06954 * 8 7 6 10 10 C 1.37841 * 121.66138 * 343.23039 * 5 4 3 11 11 C 1.46638 * 110.99825 * 237.01969 * 2 1 3 12 12 H 1.09000 * 109.29646 * 55.61786 * 11 2 1 13 13 C 1.50693 * 109.29988 * 296.03638 * 11 2 1 14 14 H 1.08003 * 120.00308 * 296.70521 * 13 11 2 15 15 C 1.37886 * 120.00011 * 116.71060 * 13 11 2 16 16 N 1.31513 * 119.99454 * 6.36484 * 15 13 11 17 17 Si 1.86802 * 120.00085 * 186.36749 * 15 13 11 18 18 H 1.48497 * 109.46943 * 59.99781 * 17 15 13 19 19 H 1.48494 * 109.46782 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46936 * 299.99983 * 17 15 13 21 21 H 1.09001 * 109.47357 * 182.98110 * 1 2 3 22 22 H 1.09007 * 109.47283 * 302.97628 * 1 2 3 23 23 H 1.08995 * 109.47337 * 62.97551 * 1 2 3 24 24 H 1.09004 * 109.63133 * 284.99398 * 3 2 1 25 25 H 1.08997 * 109.63296 * 45.38517 * 3 2 1 26 26 H 1.09001 * 109.38952 * 170.51152 * 4 3 2 27 27 H 1.08998 * 109.39546 * 290.21593 * 4 3 2 28 28 H 1.07995 * 119.83085 * 359.84471 * 6 5 4 29 29 H 1.08006 * 120.08306 * 180.02562 * 7 6 5 30 30 H 1.08000 * 120.06760 * 180.09233 * 8 7 6 31 31 H 1.08000 * 119.81006 * 179.97438 * 9 8 7 32 32 H 0.96997 * 119.99660 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3738 0.0000 4 6 3.4795 1.3242 0.3682 5 6 4.1890 0.3087 -0.4903 6 6 5.5729 0.3569 -0.5647 7 6 6.2620 -0.5569 -1.3365 8 6 5.5689 -1.5249 -2.0394 9 6 4.1915 -1.5724 -1.9675 10 6 3.4973 -0.6546 -1.1928 11 6 1.9944 -0.7452 -1.1484 12 1 1.5811 -0.3294 -2.0673 13 6 1.5901 -2.1921 -1.0305 14 1 1.9470 -2.7868 -0.2026 15 6 0.7645 -2.7568 -1.9796 16 7 0.4313 -2.0724 -3.0521 17 14 0.1193 -4.4937 -1.7420 18 1 -0.6762 -4.5592 -0.4898 19 1 -0.7408 -4.8641 -2.8943 20 1 1.2618 -5.4381 -1.6526 21 1 -0.3634 -1.0263 0.0534 22 1 -0.3634 0.5594 0.8621 23 1 -0.3634 0.4669 -0.9154 24 1 1.8796 1.8109 -0.9917 25 1 1.4545 1.9741 0.7308 26 1 3.9248 2.3064 0.2097 27 1 3.5829 1.0466 1.4172 28 1 6.1145 1.1129 -0.0157 29 1 7.3399 -0.5157 -1.3911 30 1 6.1043 -2.2426 -2.6432 31 1 3.6509 -2.3287 -2.5173 32 1 -0.1497 -2.4695 -3.7196 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147862043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:07 Heat of formation + Delta-G solvation = 8.017071 kcal Electronic energy + Delta-G solvation = -14723.260441 eV Core-core repulsion = 12454.429368 eV Total energy + Delta-G solvation = -2268.831073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.75798 -37.87348 -35.12771 -33.29933 -32.23660 -30.08512 -28.03352 -26.61210 -24.13782 -23.25571 -22.51609 -20.11234 -18.57283 -17.33591 -16.79705 -16.26135 -16.10952 -15.46792 -14.98786 -14.67844 -14.33483 -14.06097 -13.78824 -13.55110 -13.07378 -12.84742 -12.80696 -12.58706 -12.36639 -12.07447 -11.97574 -11.72794 -11.21512 -11.04092 -10.65002 -9.48086 -9.25322 -8.93217 -8.13926 -6.27303 0.68158 0.75666 1.38583 1.39779 1.48068 2.38424 3.01522 3.10458 3.54790 4.00448 4.16350 4.36157 4.39283 4.42387 4.54444 4.67897 4.76831 4.81424 4.87414 4.99730 5.02789 5.14538 5.23445 5.33908 5.41314 5.44076 5.67061 5.76787 5.83583 5.92579 6.20409 6.43256 6.46657 6.72515 6.93114 7.39103 8.88369 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027622 B = 0.012478 C = 0.009307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.447079 B = 2243.492682 C = 3007.911973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.545 5.545 3 C 0.044 3.956 4 C -0.062 4.062 5 C -0.108 4.108 6 C -0.128 4.128 7 C -0.134 4.134 8 C -0.140 4.140 9 C -0.118 4.118 10 C -0.072 4.072 11 C 0.228 3.772 12 H 0.013 0.987 13 C -0.497 4.497 14 H 0.043 0.957 15 C 0.025 3.975 16 N -0.923 5.923 17 Si 0.950 3.050 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.271 1.271 21 H 0.049 0.951 22 H 0.077 0.923 23 H -0.004 1.004 24 H 0.010 0.990 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 5.417 4.670 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.270 5.270 3 C -0.084 4.084 4 C -0.100 4.100 5 C -0.108 4.108 6 C -0.145 4.145 7 C -0.152 4.152 8 C -0.158 4.158 9 C -0.137 4.137 10 C -0.073 4.073 11 C 0.121 3.879 12 H 0.030 0.970 13 C -0.536 4.536 14 H 0.062 0.938 15 C -0.175 4.175 16 N -0.562 5.562 17 Si 0.775 3.225 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.196 1.196 21 H 0.068 0.932 22 H 0.096 0.904 23 H 0.015 0.985 24 H 0.028 0.972 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.151 0.849 31 H 0.113 0.887 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.089 5.174 4.939 10.070 hybrid contribution -1.121 -0.831 -1.149 1.807 sum 5.968 4.343 3.790 8.297 Atomic orbital electron populations 1.21960 0.88057 1.01085 0.98278 1.62589 1.07599 1.12296 1.44505 1.22245 0.96639 0.90493 0.99045 1.20486 0.93190 0.97436 0.98840 1.20023 0.94602 0.97227 0.98949 1.21324 0.92760 1.00315 1.00142 1.21298 1.00677 0.95421 0.97792 1.21289 0.93279 1.00127 1.01098 1.21134 0.94717 0.98590 0.99259 1.20358 0.96812 0.94346 0.95746 1.18252 0.87858 0.93658 0.88102 0.96982 1.20902 1.29119 0.95004 1.08536 0.93845 1.25663 0.95960 1.01374 0.94466 1.70020 1.36903 1.39274 1.09990 0.85733 0.78611 0.80381 0.77769 1.19474 1.20796 1.19627 0.93197 0.90434 0.98532 0.97215 0.89009 0.88362 0.89845 0.83476 0.83246 0.84938 0.88716 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.39 9.32 127.69 1.19 3.58 16 2 N -0.55 -24.99 4.69 -906.27 -4.25 -29.24 16 3 C 0.04 1.63 5.58 86.22 0.48 2.11 16 4 C -0.06 -2.03 5.95 29.82 0.18 -1.85 16 5 C -0.11 -4.19 5.77 -19.85 -0.11 -4.30 16 6 C -0.13 -4.06 9.66 22.33 0.22 -3.84 16 7 C -0.13 -4.15 10.05 22.23 0.22 -3.92 16 8 C -0.14 -5.11 10.05 22.22 0.22 -4.89 16 9 C -0.12 -5.47 9.07 22.33 0.20 -5.26 16 10 C -0.07 -3.41 5.46 -19.87 -0.11 -3.52 16 11 C 0.23 11.95 2.09 43.45 0.09 12.05 16 12 H 0.01 0.76 6.90 -2.39 -0.02 0.75 16 13 C -0.50 -27.82 5.94 25.60 0.15 -27.67 16 14 H 0.04 2.51 7.82 -2.91 -0.02 2.49 16 15 C 0.03 1.39 5.45 84.66 0.46 1.85 16 16 N -0.92 -53.80 12.61 21.45 0.27 -53.53 16 17 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 H 0.05 2.40 7.20 -2.39 -0.02 2.38 16 22 H 0.08 2.74 8.04 -2.38 -0.02 2.72 16 23 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 24 H 0.01 0.38 8.05 -2.38 -0.02 0.36 16 25 H 0.09 2.80 7.95 -2.39 -0.02 2.79 16 26 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 29 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 30 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 31 H 0.09 4.89 7.33 -2.91 -0.02 4.86 16 32 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -63.98 262.73 2.33 -61.65 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.09 Total: 10.79 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 3.19 Total: -35.67 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -3.98 Total: -82.77 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -63.98 2.33 -61.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147862043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.668 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds