Wall clock time and date at job start Mon Mar 30 2020 02:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35825 * 117.00383 * 2 1 4 4 C 1.38567 * 120.22841 * 0.02562 * 3 2 1 5 5 C 1.38455 * 120.07894 * 179.97438 * 4 3 2 6 6 C 1.38014 * 120.71006 * 359.63839 * 5 4 3 7 7 C 1.38990 * 120.13054 * 0.59602 * 6 5 4 8 8 O 1.34984 * 132.66425 * 179.25012 * 7 6 5 9 9 C 1.33952 * 111.56386 * 180.02562 * 8 7 6 10 10 C 1.38703 * 109.30202 * 0.02562 * 9 8 7 11 11 C 1.40965 * 127.31381 * 180.02562 * 10 9 8 12 12 H 1.07991 * 119.99877 * 180.02562 * 11 10 9 13 13 C 1.39742 * 119.99507 * 359.74463 * 11 10 9 14 14 N 1.31021 * 120.00679 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99473 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47520 * 90.00059 * 15 13 11 17 17 H 1.48504 * 109.47004 * 209.99811 * 15 13 11 18 18 H 1.48497 * 109.47481 * 329.99516 * 15 13 11 19 19 C 1.39460 * 120.23554 * 179.97438 * 3 2 1 20 20 H 1.09000 * 109.46784 * 60.00229 * 1 2 3 21 21 H 1.09003 * 109.47467 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47156 * 300.00233 * 1 2 3 23 23 H 1.08002 * 119.96254 * 359.97438 * 4 3 2 24 24 H 1.08005 * 119.64284 * 179.97438 * 5 4 3 25 25 H 1.07997 * 119.93178 * 179.87278 * 6 5 4 26 26 H 1.08005 * 125.34938 * 180.02562 * 9 8 7 27 27 H 0.96995 * 120.00330 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2957 2.3753 0.0005 5 6 1.9276 3.6073 0.0011 6 6 3.3051 3.6929 0.0086 7 6 4.0760 2.5365 0.0032 8 8 5.4093 2.3259 -0.0049 9 6 5.7013 1.0186 -0.0081 10 6 4.5237 0.2858 -0.0026 11 6 4.3905 -1.1175 -0.0031 12 1 3.4084 -1.5667 0.0012 13 6 5.5292 -1.9274 -0.0151 14 7 6.7207 -1.3824 -0.0253 15 14 5.3527 -3.7870 -0.0164 16 1 5.2928 -4.2776 -1.4168 17 1 6.5196 -4.3955 0.6717 18 1 4.1056 -4.1664 0.6948 19 6 3.4381 1.2888 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.2170 2.3225 0.0005 24 1 1.3362 4.5110 0.0011 25 1 3.7849 4.6605 0.0068 26 1 6.6972 0.6008 -0.0140 27 1 7.5111 -1.9446 -0.0341 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201982267.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:49 Heat of formation + Delta-G solvation = -41.259546 kcal Electronic energy + Delta-G solvation = -14225.915429 eV Core-core repulsion = 11721.395805 eV Total energy + Delta-G solvation = -2504.519624 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.52535 -40.21779 -37.33337 -35.93694 -32.84650 -30.50321 -29.93076 -28.02800 -27.19910 -23.52000 -22.78470 -21.86375 -19.57473 -17.93280 -17.80404 -17.05924 -16.75844 -16.45875 -16.10375 -15.84281 -15.58107 -14.38903 -13.98149 -13.48490 -13.37751 -13.07577 -13.01148 -12.95406 -12.38507 -12.18509 -11.79981 -11.76757 -11.47422 -11.45234 -10.18135 -9.26817 -8.59796 -8.53080 -6.29872 0.38358 0.61373 1.33346 1.37238 1.52861 2.04450 2.22198 2.50314 2.62200 2.86481 3.40351 4.00663 4.13966 4.34863 4.38050 4.44439 4.60773 4.69407 4.77559 4.79758 5.14252 5.32620 5.52623 5.56121 5.59795 5.80028 6.09202 6.43260 6.61276 6.70006 6.94084 7.14574 8.42581 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.030002 B = 0.011431 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.062200 B = 2448.996143 C = 3366.901933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.164 3.836 4 C -0.252 4.252 5 C -0.052 4.052 6 C -0.175 4.175 7 C 0.057 3.943 8 O -0.220 6.220 9 C -0.211 4.211 10 C -0.012 4.012 11 C -0.444 4.444 12 H 0.076 0.924 13 C 0.010 3.990 14 N -0.850 5.850 15 Si 1.001 2.999 16 H -0.263 1.263 17 H -0.264 1.264 18 H -0.261 1.261 19 C -0.219 4.219 20 H 0.069 0.931 21 H 0.112 0.888 22 H 0.069 0.931 23 H 0.163 0.837 24 H 0.177 0.823 25 H 0.146 0.854 26 H 0.215 0.785 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.499 3.304 0.018 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.118 3.882 4 C -0.271 4.271 5 C -0.069 4.069 6 C -0.194 4.194 7 C 0.007 3.993 8 O -0.123 6.123 9 C -0.276 4.276 10 C -0.014 4.014 11 C -0.475 4.475 12 H 0.094 0.906 13 C -0.199 4.199 14 N -0.481 5.481 15 Si 0.821 3.179 16 H -0.188 1.188 17 H -0.189 1.189 18 H -0.185 1.185 19 C -0.221 4.221 20 H 0.087 0.913 21 H 0.130 0.870 22 H 0.087 0.913 23 H 0.180 0.820 24 H 0.194 0.806 25 H 0.163 0.837 26 H 0.231 0.769 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.998 3.220 0.018 10.504 hybrid contribution 0.252 -0.901 -0.015 0.936 sum -9.747 2.319 0.004 10.019 Atomic orbital electron populations 1.23365 0.76681 1.05227 1.02479 1.86155 1.23361 1.27348 1.88047 1.18663 0.89383 0.85586 0.94604 1.21281 1.00798 0.90903 1.14137 1.20998 0.92092 0.98247 0.95587 1.20152 0.93367 0.94589 1.11264 1.20096 0.82608 0.95318 1.01281 1.83629 1.21734 1.29421 1.77509 1.25324 1.00877 0.76462 1.24933 1.19183 0.89326 0.93829 0.99106 1.19122 0.94417 0.89903 1.44063 0.90613 1.26787 0.93718 1.06700 0.92696 1.69378 0.99535 1.39247 1.39936 0.84910 0.78981 0.74642 0.79355 1.18763 1.18874 1.18539 1.19873 0.92864 0.95304 1.14090 0.91262 0.86954 0.91267 0.82007 0.80552 0.83657 0.76941 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.82 113.37 1.11 1.55 15 2 O -0.34 -14.21 9.58 -91.59 -0.88 -15.09 15 3 C 0.16 7.30 6.71 22.64 0.15 7.45 15 4 C -0.25 -8.46 9.05 22.40 0.20 -8.25 15 5 C -0.05 -1.58 10.00 22.27 0.22 -1.36 15 6 C -0.17 -6.64 10.06 22.40 0.23 -6.42 15 7 C 0.06 2.84 7.36 22.91 0.17 3.01 15 8 O -0.22 -12.26 10.52 -5.95 -0.06 -12.32 15 9 C -0.21 -12.64 11.08 67.93 0.75 -11.89 15 10 C -0.01 -0.72 6.13 -19.97 -0.12 -0.85 15 11 C -0.44 -26.35 9.30 23.30 0.22 -26.13 15 12 H 0.08 4.41 7.04 -2.92 -0.02 4.39 15 13 C 0.01 0.52 5.49 85.18 0.47 0.98 15 14 N -0.85 -47.05 10.38 21.80 0.23 -46.82 15 15 Si 1.00 41.24 29.56 68.60 2.03 43.26 15 16 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 17 H -0.26 -10.18 7.11 99.48 0.71 -9.48 15 18 H -0.26 -10.54 7.11 99.48 0.71 -9.84 15 19 C -0.22 -11.84 6.31 -19.99 -0.13 -11.96 15 20 H 0.07 1.53 7.67 -2.39 -0.02 1.51 15 21 H 0.11 2.45 8.14 -2.39 -0.02 2.43 15 22 H 0.07 1.53 7.67 -2.39 -0.02 1.51 15 23 H 0.16 3.95 6.31 -2.91 -0.02 3.93 15 24 H 0.18 3.48 8.06 -2.91 -0.02 3.46 15 25 H 0.15 4.56 8.06 -2.91 -0.02 4.54 15 26 H 0.21 12.88 5.72 -2.91 -0.02 12.87 15 27 H 0.29 14.30 8.30 -92.71 -0.77 13.53 15 Total: -1.00 -71.44 239.63 5.78 -65.66 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.19 Total: 19.17 kcal Atomic # 6 Polarization: -57.14 SS G_CDS: 3.27 Total: -53.87 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.23 Total: -46.82 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.94 Total: -27.41 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -71.44 5.78 -65.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201982267.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.397 kcal (2) G-P(sol) polarization free energy of solvation -71.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds