Wall clock time and date at job start Mon Mar 30 2020 02:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47962 * 110.99746 * 2 1 4 4 C 1.53939 * 86.17967 * 222.42038 * 3 2 1 5 5 C 1.50695 * 113.73403 * 138.08009 * 4 3 2 6 6 C 1.37637 * 120.13045 * 299.99755 * 5 4 3 7 7 C 1.38610 * 120.25135 * 179.70594 * 6 5 4 8 8 C 1.38652 * 120.50276 * 0.29285 * 7 6 5 9 9 C 1.37598 * 120.24859 * 359.97438 * 8 7 6 10 10 C 1.40708 * 120.12962 * 120.24590 * 5 4 3 11 11 C 1.41393 * 120.24307 * 0.02562 * 10 5 4 12 12 H 1.08007 * 119.99872 * 333.29762 * 11 10 5 13 13 C 1.39939 * 120.00152 * 153.29720 * 11 10 5 14 14 N 1.30828 * 120.00083 * 344.60134 * 13 11 10 15 15 Si 1.86806 * 120.00187 * 164.59758 * 13 11 10 16 16 H 1.48505 * 109.46799 * 0.02562 * 15 13 11 17 17 H 1.48492 * 109.47142 * 120.00297 * 15 13 11 18 18 H 1.48500 * 109.47026 * 240.00302 * 15 13 11 19 19 C 1.47962 * 110.99817 * 260.64279 * 2 1 3 20 20 H 1.08994 * 109.47498 * 60.00155 * 1 2 3 21 21 H 1.09004 * 109.47167 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47488 * 299.99904 * 1 2 3 23 23 H 1.08992 * 113.75944 * 108.10270 * 3 2 1 24 24 H 1.08997 * 113.76084 * 336.72932 * 3 2 1 25 25 H 1.09004 * 113.73402 * 269.25776 * 4 3 2 26 26 H 1.08001 * 119.87323 * 359.97391 * 6 5 4 27 27 H 1.08005 * 119.75066 * 180.27878 * 7 6 5 28 28 H 1.07994 * 119.88062 * 179.97438 * 8 7 6 29 29 H 1.08005 * 120.13247 * 180.02562 * 9 8 7 30 30 H 0.96996 * 119.99685 * 180.02562 * 14 13 11 31 31 H 1.08996 * 113.76008 * 23.26255 * 19 2 1 32 32 H 1.09009 * 113.75598 * 251.89375 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9991 1.3814 0.0000 4 6 3.0210 0.8793 -1.0361 5 6 3.2573 1.8424 -2.1708 6 6 2.2141 2.2191 -2.9859 7 6 2.4274 3.1095 -4.0266 8 6 3.6923 3.6258 -4.2629 9 6 4.7511 3.2590 -3.4643 10 6 4.5463 2.3559 -2.4045 11 6 5.6267 1.9716 -1.5774 12 1 5.4437 1.6618 -0.5591 13 6 6.9333 1.9925 -2.0782 14 7 7.1383 2.0698 -3.3681 15 14 8.3847 1.9102 -0.9052 16 1 7.8879 1.8279 0.4919 17 1 9.2011 0.7081 -1.2114 18 1 9.2189 3.1285 -1.0635 19 6 1.9991 -0.2246 -1.3630 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 2.4459 1.6803 0.9482 24 1 1.3009 2.1198 -0.3941 25 1 3.9458 0.5069 -0.5954 26 1 1.2247 1.8228 -2.8112 27 1 1.6021 3.4031 -4.6584 28 1 3.8472 4.3185 -5.0768 29 1 5.7355 3.6627 -3.6498 30 1 8.0439 2.0840 -3.7151 31 1 1.3009 0.0441 -2.1556 32 1 2.4460 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214458702.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:29 Heat of formation + Delta-G solvation = 47.632650 kcal Electronic energy + Delta-G solvation = -14350.197731 eV Core-core repulsion = 12083.084518 eV Total energy + Delta-G solvation = -2267.113213 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.61010 -37.08076 -33.62678 -31.34148 -29.57584 -28.29553 -25.54078 -25.28912 -23.44837 -21.27301 -20.19452 -18.37962 -17.26148 -15.80651 -15.17250 -14.97505 -14.36133 -14.11439 -13.57036 -13.11786 -12.61556 -12.38170 -12.15756 -11.76540 -11.45479 -11.25442 -11.11711 -10.98336 -10.77333 -10.44334 -10.20647 -10.06379 -9.31165 -9.30171 -9.18846 -8.38497 -7.36449 -7.31438 -6.73870 -4.35601 2.76732 2.94545 3.08872 3.14174 3.22688 3.94488 4.44969 4.63377 5.23060 5.37888 5.44883 5.64688 5.87254 5.93366 5.98176 6.03843 6.15288 6.23347 6.33800 6.35457 6.47141 6.69083 6.83048 6.84586 7.14513 7.25472 7.38560 7.47993 7.62814 7.90693 8.03920 8.08347 8.29787 8.62908 8.90067 8.97173 10.20759 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026883 B = 0.010461 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.317666 B = 2675.957309 C = 3518.718610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.491 5.491 3 C 0.005 3.995 4 C -0.043 4.043 5 C -0.187 4.187 6 C -0.089 4.089 7 C -0.241 4.241 8 C -0.108 4.108 9 C -0.160 4.160 10 C 0.120 3.880 11 C -0.460 4.460 12 H 0.081 0.919 13 C 0.076 3.924 14 N -0.796 5.796 15 Si 0.905 3.095 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.273 1.273 19 C 0.003 3.997 20 H 0.031 0.969 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.279 0.721 31 H 0.068 0.932 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.214 -1.179 3.153 6.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.213 5.213 3 C -0.123 4.123 4 C -0.061 4.061 5 C -0.189 4.189 6 C -0.107 4.107 7 C -0.260 4.260 8 C -0.126 4.126 9 C -0.180 4.180 10 C 0.118 3.882 11 C -0.490 4.490 12 H 0.099 0.901 13 C -0.142 4.142 14 N -0.422 5.422 15 Si 0.730 3.270 16 H -0.183 1.183 17 H -0.200 1.200 18 H -0.198 1.198 19 C -0.126 4.126 20 H 0.049 0.951 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.135 0.865 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.879 -1.648 3.528 6.243 hybrid contribution 0.263 0.493 -0.351 0.660 sum -4.616 -1.155 3.177 5.722 Atomic orbital electron populations 1.22811 0.90946 1.01531 1.00543 1.68431 1.07906 1.19581 1.25355 1.24092 0.97572 0.90380 1.00305 1.21529 0.97187 0.93539 0.93874 1.19440 0.94687 1.04171 1.00593 1.20292 0.96323 0.98091 0.96021 1.20328 0.96280 1.06720 1.02685 1.20686 0.93574 0.99664 0.98697 1.21326 0.97849 1.00128 0.98663 1.17458 0.91011 0.88536 0.91199 1.19601 0.90386 1.39538 0.99437 0.90077 1.25900 1.00634 0.92402 0.95233 1.69827 1.23374 1.35985 1.13021 0.86307 0.80639 0.78496 0.81592 1.18328 1.20046 1.19815 1.24181 0.97743 1.00597 0.90035 0.95078 0.91838 0.91985 0.90152 0.91687 0.87712 0.89904 0.89746 0.89575 0.86539 0.91014 0.91413 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.64 60.06 0.58 0.45 16 2 N -0.49 -8.32 6.56 -246.66 -1.62 -9.94 16 3 C 0.01 0.09 7.45 -2.76 -0.02 0.07 16 4 C -0.04 -0.87 3.85 -90.84 -0.35 -1.22 16 5 C -0.19 -4.36 5.36 -103.91 -0.56 -4.92 16 6 C -0.09 -1.97 8.62 -39.66 -0.34 -2.31 16 7 C -0.24 -5.40 10.05 -39.29 -0.39 -5.80 16 8 C -0.11 -2.54 10.02 -39.66 -0.40 -2.94 16 9 C -0.16 -4.14 8.68 -38.87 -0.34 -4.48 16 10 C 0.12 3.12 5.55 -106.82 -0.59 2.53 16 11 C -0.46 -11.82 8.24 -37.75 -0.31 -12.13 16 12 H 0.08 2.01 6.55 -52.48 -0.34 1.67 16 13 C 0.08 1.87 5.17 -17.34 -0.09 1.78 16 14 N -0.80 -20.42 10.98 55.55 0.61 -19.81 16 15 Si 0.91 18.55 29.59 -169.99 -5.03 13.52 16 16 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 17 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 C 0.00 0.05 7.34 -2.77 -0.02 0.03 16 20 H 0.03 0.43 7.62 -51.93 -0.40 0.03 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.06 1.15 7.53 -51.93 -0.39 0.76 16 25 H 0.10 2.28 6.24 -51.93 -0.32 1.95 16 26 H 0.08 1.64 6.63 -52.49 -0.35 1.29 16 27 H 0.08 1.69 8.06 -52.48 -0.42 1.26 16 28 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.12 3.11 6.26 -52.48 -0.33 2.78 16 30 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 31 H 0.07 1.19 5.78 -51.93 -0.30 0.89 16 32 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 LS Contribution 262.01 15.07 3.95 3.95 Total: -1.00 -26.47 262.01 -9.02 -35.49 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.10 Total: 5.72 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -2.83 Total: -28.93 kcal Atomic # 7 Polarization: -28.74 SS G_CDS: -1.01 Total: -29.75 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.47 -9.02 -35.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214458702.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.125 kcal (2) G-P(sol) polarization free energy of solvation -26.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds