Wall clock time and date at job start Mon Mar 30 2020 02:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46406 * 111.00374 * 2 1 4 4 C 1.53372 * 108.65768 * 179.00341 * 3 2 1 5 5 C 1.53018 * 107.94070 * 291.61936 * 4 3 2 6 6 C 1.50894 * 109.67943 * 47.50164 * 5 4 3 7 7 C 1.39073 * 117.89579 * 164.47506 * 6 5 4 8 8 C 1.37393 * 120.84138 * 179.42173 * 7 6 5 9 9 C 1.40786 * 119.63156 * 359.92269 * 8 7 6 10 10 C 1.41414 * 120.29030 * 180.20503 * 9 8 7 11 11 H 1.07998 * 119.99844 * 204.94079 * 10 9 8 12 12 C 1.39921 * 119.99686 * 24.94363 * 10 9 8 13 13 N 1.30828 * 120.00428 * 17.72677 * 12 10 9 14 14 Si 1.86803 * 119.99803 * 197.72352 * 12 10 9 15 15 H 1.48498 * 109.47137 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47337 * 119.99891 * 14 12 10 17 17 H 1.48498 * 109.47378 * 239.99853 * 14 12 10 18 18 C 1.40275 * 119.42088 * 0.48671 * 9 8 7 19 19 C 1.38861 * 121.86749 * 344.11861 * 6 5 4 20 20 H 1.08998 * 109.47258 * 286.17305 * 1 2 3 21 21 H 1.09008 * 109.47110 * 46.16929 * 1 2 3 22 22 H 1.09002 * 109.47242 * 166.16919 * 1 2 3 23 23 H 1.08997 * 109.60946 * 298.75904 * 3 2 1 24 24 H 1.09005 * 109.60034 * 59.08866 * 3 2 1 25 25 H 1.08999 * 109.76873 * 51.23533 * 4 3 2 26 26 H 1.09005 * 109.76594 * 171.95842 * 4 3 2 27 27 H 1.08993 * 109.43953 * 287.43299 * 5 4 3 28 28 H 1.09003 * 109.43177 * 167.55737 * 5 4 3 29 29 H 1.08003 * 119.58221 * 359.39963 * 7 6 5 30 30 H 1.08008 * 120.18354 * 179.97438 * 8 7 6 31 31 H 0.97006 * 120.00547 * 180.02562 * 13 12 10 32 32 H 1.08005 * 119.88581 * 179.66653 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9937 1.3668 0.0000 4 6 3.5259 1.3041 0.0253 5 6 3.9528 0.7573 1.3892 6 6 3.1398 -0.4694 1.7220 7 6 3.5940 -1.2928 2.7467 8 6 2.8946 -2.4189 3.1078 9 6 1.7019 -2.7436 2.4338 10 6 0.9687 -3.8970 2.7970 11 1 0.3190 -4.3726 2.0773 12 6 1.0850 -4.4218 4.0889 13 7 1.5757 -3.6854 5.0525 14 14 0.5395 -6.1741 4.4377 15 1 0.0252 -6.7903 3.1884 16 1 1.6946 -6.9617 4.9384 17 1 -0.5342 -6.1634 5.4634 18 6 1.2504 -1.9163 1.3949 19 6 1.9687 -0.7792 1.0432 20 1 -0.3634 0.2862 0.9870 21 1 -0.3634 0.7117 -0.7414 22 1 -0.3634 -0.9979 -0.2457 23 1 1.6636 1.8853 -0.9001 24 1 1.6323 1.8972 0.8810 25 1 3.8809 0.6423 -0.7648 26 1 3.9381 2.3030 -0.1178 27 1 3.7900 1.5184 2.1522 28 1 5.0103 0.4945 1.3597 29 1 4.5083 -1.0441 3.2649 30 1 3.2573 -3.0511 3.9049 31 1 1.6567 -4.0494 5.9480 32 1 0.3393 -2.1613 0.8692 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214458865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:14 Heat of formation + Delta-G solvation = 14.208458 kcal Electronic energy + Delta-G solvation = -14426.794034 eV Core-core repulsion = 12158.231439 eV Total energy + Delta-G solvation = -2268.562595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.24626 -35.92608 -33.71079 -32.98945 -29.48728 -28.47382 -26.51252 -25.32795 -22.87426 -21.79794 -20.21610 -18.80471 -17.15905 -15.39253 -15.28887 -14.90478 -14.48770 -13.63753 -13.52389 -13.12464 -12.67650 -12.37023 -12.26964 -11.93516 -11.42064 -11.38503 -11.07438 -11.04029 -10.80942 -10.48170 -10.19623 -10.13096 -9.66550 -9.26786 -9.18917 -8.59079 -7.31194 -6.74653 -6.50843 -4.31732 2.78652 3.04948 3.09156 3.14700 3.21706 3.95456 4.48295 4.68319 5.32641 5.41517 5.53337 5.69843 5.75442 5.94875 5.99162 6.11688 6.21732 6.25186 6.36978 6.48341 6.51915 6.68365 6.87751 7.03465 7.07446 7.17009 7.37289 7.66058 7.82457 7.99675 8.15824 8.21484 8.44763 8.71717 8.95257 9.03481 10.22079 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.047317 B = 0.008352 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.609875 B = 3351.764169 C = 3801.064150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.502 5.502 3 C 0.062 3.938 4 C -0.117 4.117 5 C -0.054 4.054 6 C -0.240 4.240 7 C -0.086 4.086 8 C -0.175 4.175 9 C 0.127 3.873 10 C -0.463 4.463 11 H 0.077 0.923 12 C 0.077 3.923 13 N -0.794 5.794 14 Si 0.906 3.094 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.275 1.275 18 C -0.260 4.260 19 C 0.140 3.860 20 H 0.033 0.967 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.279 0.721 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 5.348 -4.499 7.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.217 5.217 3 C -0.065 4.065 4 C -0.155 4.155 5 C -0.091 4.091 6 C -0.244 4.244 7 C -0.105 4.105 8 C -0.194 4.194 9 C 0.124 3.876 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.730 3.270 15 H -0.184 1.184 16 H -0.197 1.197 17 H -0.201 1.201 18 C -0.282 4.282 19 C 0.044 3.956 20 H 0.052 0.948 21 H 0.076 0.924 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.703 5.189 -4.715 7.046 hybrid contribution -0.490 -0.483 0.978 1.196 sum 0.213 4.706 -3.737 6.013 Atomic orbital electron populations 1.22375 0.86494 1.02406 1.00072 1.58312 1.07621 1.12051 1.43739 1.22000 0.95831 0.88719 0.99929 1.21632 0.94716 1.00286 0.98822 1.20168 0.98219 0.95536 0.95203 1.18784 1.00153 1.01317 1.04156 1.20475 0.98253 0.95599 0.96160 1.21229 0.96154 0.98572 1.03481 1.17405 0.90267 0.90663 0.89310 1.19578 1.23582 1.09284 0.96810 0.90506 1.25894 0.93337 0.98973 0.95863 1.69852 1.34403 1.36054 1.01630 0.86305 0.78970 0.82456 0.79237 1.18410 1.19724 1.20064 1.20921 1.02408 0.98211 1.06679 1.18187 0.94476 0.93895 0.89073 0.94841 0.92368 0.90745 0.91365 0.94705 0.91247 0.92093 0.93408 0.92721 0.89482 0.86594 0.91031 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 8.75 60.06 0.53 1.10 16 2 N -0.50 -9.91 4.77 -179.17 -0.86 -10.77 16 3 C 0.06 1.03 5.43 -3.90 -0.02 1.01 16 4 C -0.12 -1.87 6.18 -26.53 -0.16 -2.03 16 5 C -0.05 -0.99 5.80 -27.78 -0.16 -1.16 16 6 C -0.24 -5.51 5.77 -103.99 -0.60 -6.11 16 7 C -0.09 -2.07 9.60 -39.58 -0.38 -2.45 16 8 C -0.17 -4.65 8.69 -38.93 -0.34 -4.99 16 9 C 0.13 3.46 5.56 -106.96 -0.59 2.86 16 10 C -0.46 -12.51 9.05 -37.74 -0.34 -12.85 16 11 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 12 C 0.08 1.96 5.14 -17.35 -0.09 1.87 16 13 N -0.79 -20.79 10.99 55.55 0.61 -20.18 16 14 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 15 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 18 C -0.26 -6.60 8.76 -38.53 -0.34 -6.93 16 19 C 0.14 3.27 5.79 -83.87 -0.49 2.79 16 20 H 0.03 0.60 8.09 -51.93 -0.42 0.18 16 21 H 0.06 0.81 8.01 -51.92 -0.42 0.40 16 22 H 0.07 1.30 6.49 -51.93 -0.34 0.96 16 23 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 24 H 0.03 0.59 8.11 -51.93 -0.42 0.17 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.89 8.05 -52.48 -0.42 1.47 16 30 H 0.12 3.17 6.21 -52.48 -0.33 2.84 16 31 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 32 H 0.10 2.34 6.02 -52.48 -0.32 2.02 16 LS Contribution 259.08 15.07 3.90 3.90 Total: -1.00 -28.31 259.08 -8.68 -36.99 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.32 Total: 3.10 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -2.99 Total: -26.89 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: -0.25 Total: -30.95 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.31 -8.68 -36.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214458865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.202 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds