Wall clock time and date at job start Mon Mar 30 2020 02:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46422 * 110.99710 * 2 1 4 4 C 1.53388 * 108.66399 * 179.10656 * 3 2 1 5 5 C 1.53059 * 107.91168 * 292.13023 * 4 3 2 6 6 C 1.50821 * 109.61989 * 47.11631 * 5 4 3 7 7 C 1.38720 * 118.14042 * 164.40005 * 6 5 4 8 8 C 1.38643 * 121.02946 * 179.38756 * 7 6 5 9 9 C 1.36487 * 120.36978 * 359.89049 * 8 7 6 10 10 C 1.40451 * 119.81896 * 0.10495 * 9 8 7 11 11 C 1.41046 * 120.09274 * 180.24585 * 10 9 8 12 12 H 1.08000 * 120.00158 * 230.90184 * 11 10 9 13 13 C 1.39922 * 119.99679 * 50.90933 * 11 10 9 14 14 N 1.30877 * 120.00373 * 5.48905 * 13 11 10 15 15 Si 1.86803 * 119.99868 * 185.49056 * 13 11 10 16 16 H 1.48495 * 109.47102 * 59.99714 * 15 13 11 17 17 H 1.48498 * 109.47384 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46848 * 299.99682 * 15 13 11 19 19 C 1.38163 * 121.95877 * 344.03528 * 6 5 4 20 20 H 1.09000 * 109.47372 * 263.51810 * 1 2 3 21 21 H 1.09004 * 109.47022 * 23.52266 * 1 2 3 22 22 H 1.09001 * 109.47064 * 143.51874 * 1 2 3 23 23 H 1.09002 * 109.60208 * 59.35753 * 3 2 1 24 24 H 1.08998 * 109.74247 * 298.94265 * 3 2 1 25 25 H 1.09001 * 109.77288 * 172.52195 * 4 3 2 26 26 H 1.09003 * 109.81887 * 51.75691 * 4 3 2 27 27 H 1.08998 * 109.44460 * 287.07181 * 5 4 3 28 28 H 1.08995 * 109.42253 * 167.14757 * 5 4 3 29 29 H 1.08004 * 119.48266 * 359.37367 * 7 6 5 30 30 H 1.08000 * 119.81039 * 179.87243 * 8 7 6 31 31 H 1.07999 * 120.09104 * 180.12783 * 9 8 7 32 32 H 0.96997 * 120.00156 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3670 0.0000 4 6 3.5261 1.3046 0.0227 5 6 3.9544 0.7448 1.3813 6 6 3.1349 -0.4790 1.7059 7 6 3.5817 -1.3160 2.7179 8 6 2.8686 -2.4503 3.0742 9 6 1.7055 -2.7641 2.4325 10 6 1.2295 -1.9344 1.4041 11 6 0.0256 -2.2504 0.7406 12 1 -0.0039 -2.2827 -0.3385 13 6 -1.1305 -2.5218 1.4806 14 7 -1.1237 -2.3781 2.7814 15 14 -2.6838 -3.0893 0.6118 16 1 -2.4123 -4.3593 -0.1083 17 1 -3.7593 -3.3071 1.6123 18 1 -3.1148 -2.0519 -0.3595 19 6 1.9649 -0.7751 1.0335 20 1 -0.3634 -0.1160 1.0211 21 1 -0.3633 0.9423 -0.4102 22 1 -0.3633 -0.8263 -0.6110 23 1 1.6361 1.8959 0.8835 24 1 1.6621 1.8886 -0.8978 25 1 3.9379 2.3050 -0.1104 26 1 3.8812 0.6509 -0.7740 27 1 3.7981 1.5008 2.1508 28 1 5.0100 0.4758 1.3460 29 1 4.4995 -1.0805 3.2362 30 1 3.2356 -3.0894 3.8637 31 1 1.1525 -3.6477 2.7151 32 1 -1.9253 -2.5659 3.2943 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214458949.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:15 Heat of formation + Delta-G solvation = 34.250830 kcal Electronic energy + Delta-G solvation = -14908.419697 eV Core-core repulsion = 12640.726205 eV Total energy + Delta-G solvation = -2267.693492 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.38691 -35.56305 -34.50095 -32.33536 -29.19872 -28.85970 -26.78678 -24.51627 -22.58451 -22.12196 -20.34132 -18.53563 -17.01229 -15.50632 -15.27065 -14.60144 -14.39983 -13.63421 -13.29442 -13.09055 -12.61893 -12.49052 -12.06062 -11.71718 -11.25906 -11.19007 -11.03157 -10.85710 -10.65836 -10.57818 -10.24627 -10.00718 -9.48222 -9.34144 -8.80744 -8.56734 -7.07535 -6.55738 -6.26617 -4.16947 2.83151 2.90683 3.16009 3.18857 3.19922 4.09651 4.73047 4.94119 5.36190 5.40755 5.53839 5.74386 6.03377 6.08770 6.15550 6.23570 6.27721 6.39098 6.41586 6.57621 6.68690 6.86902 6.91810 7.17676 7.20486 7.37831 7.45588 7.55495 7.87539 8.04849 8.14344 8.33694 8.43604 8.73866 8.98920 9.08976 10.51933 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033710 B = 0.012272 C = 0.009501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.421696 B = 2281.108642 C = 2946.332307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.487 5.487 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.069 4.069 6 C -0.120 4.120 7 C -0.185 4.185 8 C -0.136 4.136 9 C -0.123 4.123 10 C 0.096 3.904 11 C -0.481 4.481 12 H 0.082 0.918 13 C 0.073 3.927 14 N -0.830 5.830 15 Si 0.898 3.102 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.048 3.952 20 H 0.058 0.942 21 H 0.019 0.981 22 H 0.090 0.910 23 H 0.031 0.969 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 4.500 -2.707 6.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.202 5.202 3 C -0.067 4.067 4 C -0.156 4.156 5 C -0.106 4.106 6 C -0.123 4.123 7 C -0.205 4.205 8 C -0.155 4.155 9 C -0.143 4.143 10 C 0.093 3.907 11 C -0.514 4.514 12 H 0.100 0.900 13 C -0.139 4.139 14 N -0.459 5.459 15 Si 0.724 3.276 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.050 4.050 20 H 0.077 0.923 21 H 0.038 0.962 22 H 0.108 0.892 23 H 0.049 0.951 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.242 4.328 -2.984 6.176 hybrid contribution -1.035 0.017 0.504 1.151 sum 2.207 4.345 -2.479 5.468 Atomic orbital electron populations 1.22890 0.85260 0.99010 1.03380 1.57931 1.09018 1.10398 1.42811 1.22043 0.95077 0.89741 0.99827 1.21657 0.95466 1.00224 0.98208 1.20383 0.98395 0.95612 0.96231 1.19052 0.96799 0.97586 0.98897 1.20289 1.00955 0.98148 1.01076 1.20351 0.97103 0.97654 1.00419 1.20794 0.94591 0.99442 0.99456 1.17450 0.91955 0.89066 0.92276 1.19119 0.93372 1.44709 0.94231 0.89992 1.25589 0.99906 0.93811 0.94638 1.69748 1.29815 1.40046 1.06299 0.86535 0.81215 0.80132 0.79726 1.19266 1.20788 1.19191 1.18884 0.96773 0.95366 0.93978 0.92282 0.96203 0.89193 0.95116 0.91398 0.92073 0.91174 0.92444 0.92055 0.89204 0.89285 0.88010 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 8.21 60.07 0.49 1.37 16 2 N -0.49 -10.77 4.71 -178.66 -0.84 -11.62 16 3 C 0.06 1.10 5.26 -3.88 -0.02 1.08 16 4 C -0.12 -1.94 6.20 -26.50 -0.16 -2.10 16 5 C -0.07 -1.24 5.82 -27.79 -0.16 -1.40 16 6 C -0.12 -2.70 5.74 -104.41 -0.60 -3.30 16 7 C -0.19 -4.13 9.63 -39.25 -0.38 -4.51 16 8 C -0.14 -3.18 9.97 -40.06 -0.40 -3.58 16 9 C -0.12 -3.17 8.63 -39.38 -0.34 -3.51 16 10 C 0.10 2.53 4.91 -106.48 -0.52 2.01 16 11 C -0.48 -12.45 4.95 -37.89 -0.19 -12.64 16 12 H 0.08 2.10 6.12 -52.49 -0.32 1.77 16 13 C 0.07 1.84 4.86 -17.33 -0.08 1.75 16 14 N -0.83 -22.07 12.23 55.55 0.68 -21.39 16 15 Si 0.90 19.16 29.56 -169.99 -5.03 14.14 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 19 C 0.05 1.18 5.75 -83.42 -0.48 0.70 16 20 H 0.06 1.47 6.12 -51.93 -0.32 1.15 16 21 H 0.02 0.37 7.66 -51.93 -0.40 -0.03 16 22 H 0.09 2.02 5.22 -51.93 -0.27 1.75 16 23 H 0.03 0.58 8.11 -51.93 -0.42 0.16 16 24 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.76 8.05 -52.48 -0.42 1.33 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.10 2.69 7.76 -52.49 -0.41 2.28 16 32 H 0.27 6.84 8.30 -40.82 -0.34 6.50 16 LS Contribution 253.84 15.07 3.83 3.83 Total: -1.00 -27.49 253.84 -8.44 -35.92 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.23 Total: 3.27 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.85 Total: -24.14 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: -0.16 Total: -33.01 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.49 -8.44 -35.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214458949.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.173 kcal (2) G-P(sol) polarization free energy of solvation -27.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds