Wall clock time and date at job start Mon Mar 30 2020 02:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46422 * 110.99710 * 2 1 4 4 C 1.53388 * 108.66399 * 179.10656 * 3 2 1 5 5 C 1.53059 * 107.91168 * 292.13023 * 4 3 2 6 6 C 1.50821 * 109.61989 * 47.11631 * 5 4 3 7 7 C 1.38720 * 118.14042 * 164.40005 * 6 5 4 8 8 C 1.38643 * 121.02946 * 179.38756 * 7 6 5 9 9 C 1.36487 * 120.36978 * 359.89049 * 8 7 6 10 10 C 1.40451 * 119.81896 * 0.10495 * 9 8 7 11 11 C 1.41046 * 120.09274 * 180.24585 * 10 9 8 12 12 H 1.08000 * 120.00158 * 230.90184 * 11 10 9 13 13 C 1.39922 * 119.99679 * 50.90933 * 11 10 9 14 14 N 1.30877 * 120.00373 * 5.48905 * 13 11 10 15 15 Si 1.86803 * 119.99868 * 185.49056 * 13 11 10 16 16 H 1.48495 * 109.47102 * 59.99714 * 15 13 11 17 17 H 1.48498 * 109.47384 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46848 * 299.99682 * 15 13 11 19 19 C 1.38163 * 121.95877 * 344.03528 * 6 5 4 20 20 H 1.09000 * 109.47372 * 263.51810 * 1 2 3 21 21 H 1.09004 * 109.47022 * 23.52266 * 1 2 3 22 22 H 1.09001 * 109.47064 * 143.51874 * 1 2 3 23 23 H 1.09002 * 109.60208 * 59.35753 * 3 2 1 24 24 H 1.08998 * 109.74247 * 298.94265 * 3 2 1 25 25 H 1.09001 * 109.77288 * 172.52195 * 4 3 2 26 26 H 1.09003 * 109.81887 * 51.75691 * 4 3 2 27 27 H 1.08998 * 109.44460 * 287.07181 * 5 4 3 28 28 H 1.08995 * 109.42253 * 167.14757 * 5 4 3 29 29 H 1.08004 * 119.48266 * 359.37367 * 7 6 5 30 30 H 1.08000 * 119.81039 * 179.87243 * 8 7 6 31 31 H 1.07999 * 120.09104 * 180.12783 * 9 8 7 32 32 H 0.96997 * 120.00156 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3670 0.0000 4 6 3.5261 1.3046 0.0227 5 6 3.9544 0.7448 1.3813 6 6 3.1349 -0.4790 1.7059 7 6 3.5817 -1.3160 2.7179 8 6 2.8686 -2.4503 3.0742 9 6 1.7055 -2.7641 2.4325 10 6 1.2295 -1.9344 1.4041 11 6 0.0256 -2.2504 0.7406 12 1 -0.0039 -2.2827 -0.3385 13 6 -1.1305 -2.5218 1.4806 14 7 -1.1237 -2.3781 2.7814 15 14 -2.6838 -3.0893 0.6118 16 1 -2.4123 -4.3593 -0.1083 17 1 -3.7593 -3.3071 1.6123 18 1 -3.1148 -2.0519 -0.3595 19 6 1.9649 -0.7751 1.0335 20 1 -0.3634 -0.1160 1.0211 21 1 -0.3633 0.9423 -0.4102 22 1 -0.3633 -0.8263 -0.6110 23 1 1.6361 1.8959 0.8835 24 1 1.6621 1.8886 -0.8978 25 1 3.9379 2.3050 -0.1104 26 1 3.8812 0.6509 -0.7740 27 1 3.7981 1.5008 2.1508 28 1 5.0100 0.4758 1.3460 29 1 4.4995 -1.0805 3.2362 30 1 3.2356 -3.0894 3.8637 31 1 1.1525 -3.6477 2.7151 32 1 -1.9253 -2.5659 3.2943 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214458949.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:15 Heat of formation + Delta-G solvation = 18.790698 kcal Electronic energy + Delta-G solvation = -14909.090099 eV Core-core repulsion = 12640.726205 eV Total energy + Delta-G solvation = -2268.363894 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.08816 -37.28142 -36.23953 -34.06947 -30.88917 -30.65658 -28.57033 -26.22022 -24.31623 -23.71666 -22.14729 -20.15968 -18.88111 -17.27867 -17.01598 -16.29470 -16.00994 -15.33574 -14.87094 -14.79054 -14.22699 -14.17150 -13.77497 -13.43467 -13.02679 -12.83793 -12.69693 -12.50734 -12.39199 -12.22560 -11.82185 -11.51637 -11.23906 -11.11390 -10.68627 -10.32987 -8.91766 -8.46047 -8.06374 -6.13704 1.00535 1.06613 1.40493 1.47617 1.49318 2.30152 2.87093 3.27191 3.63737 3.99783 4.11882 4.25621 4.47561 4.54099 4.65413 4.76246 4.77070 4.83683 4.94835 5.04100 5.10962 5.14427 5.31649 5.37027 5.45180 5.50816 5.65335 5.77451 6.02235 6.18225 6.32298 6.45240 6.65277 6.87416 7.08221 7.20206 8.63144 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033710 B = 0.012272 C = 0.009501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.421696 B = 2281.108642 C = 2946.332307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.496 5.496 3 C 0.054 3.946 4 C -0.111 4.111 5 C -0.069 4.069 6 C -0.131 4.131 7 C -0.183 4.183 8 C -0.147 4.147 9 C -0.149 4.149 10 C 0.058 3.942 11 C -0.493 4.493 12 H 0.076 0.924 13 C 0.034 3.966 14 N -0.868 5.868 15 Si 0.961 3.039 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.255 1.255 19 C 0.035 3.965 20 H 0.021 0.979 21 H 0.050 0.950 22 H 0.078 0.922 23 H 0.025 0.975 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 6.251 -3.601 8.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.210 5.210 3 C -0.073 4.073 4 C -0.148 4.148 5 C -0.106 4.106 6 C -0.135 4.135 7 C -0.202 4.202 8 C -0.166 4.166 9 C -0.169 4.169 10 C 0.055 3.945 11 C -0.526 4.526 12 H 0.094 0.906 13 C -0.174 4.174 14 N -0.499 5.499 15 Si 0.784 3.216 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.179 1.179 19 C -0.064 4.064 20 H 0.040 0.960 21 H 0.069 0.931 22 H 0.096 0.904 23 H 0.043 0.957 24 H 0.113 0.887 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.142 0.858 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.384 6.093 -3.892 8.455 hybrid contribution -1.265 -0.479 0.795 1.569 sum 3.119 5.614 -3.097 7.130 Atomic orbital electron populations 1.22624 0.85607 1.00116 1.01005 1.57917 1.08798 1.12484 1.41847 1.22270 0.96639 0.87529 1.00837 1.21671 0.93825 1.02371 0.96977 1.20483 0.98749 0.93779 0.97556 1.19665 0.96526 0.99209 0.98055 1.20734 1.01632 0.97142 1.00728 1.20631 0.96445 0.98725 1.00777 1.20763 0.95889 0.99403 1.00814 1.17825 0.92980 0.90402 0.93314 1.19187 0.93970 1.45489 0.93919 0.90585 1.26291 1.02593 0.93446 0.95064 1.69845 1.30654 1.41657 1.07761 0.85566 0.77525 0.79779 0.78770 1.19129 1.20473 1.17922 1.19156 0.97422 0.95270 0.94573 0.95966 0.93132 0.90387 0.95662 0.88746 0.87902 0.91760 0.91080 0.89780 0.85844 0.87162 0.90308 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.28 8.21 127.69 1.05 3.32 16 2 N -0.50 -21.47 4.71 -719.16 -3.39 -24.86 16 3 C 0.05 1.80 5.26 86.52 0.46 2.26 16 4 C -0.11 -3.18 6.20 30.74 0.19 -2.99 16 5 C -0.07 -2.20 5.82 29.91 0.17 -2.03 16 6 C -0.13 -5.68 5.74 -19.73 -0.11 -5.79 16 7 C -0.18 -7.85 9.63 22.48 0.22 -7.63 16 8 C -0.15 -6.88 9.97 21.96 0.22 -6.66 16 9 C -0.15 -7.98 8.63 22.40 0.19 -7.79 16 10 C 0.06 3.16 4.91 -21.07 -0.10 3.06 16 11 C -0.49 -26.42 4.95 23.37 0.12 -26.30 16 12 H 0.08 4.03 6.12 -2.91 -0.02 4.01 16 13 C 0.03 1.79 4.86 85.24 0.41 2.21 16 14 N -0.87 -48.11 12.23 21.83 0.27 -47.84 16 15 Si 0.96 40.16 29.56 68.60 2.03 42.19 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 17 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 C 0.03 1.69 5.75 39.08 0.22 1.91 16 20 H 0.02 1.11 6.12 -2.39 -0.01 1.10 16 21 H 0.05 1.84 7.66 -2.38 -0.02 1.82 16 22 H 0.08 3.54 5.22 -2.39 -0.01 3.53 16 23 H 0.03 0.88 8.11 -2.39 -0.02 0.86 16 24 H 0.09 2.66 8.10 -2.39 -0.02 2.64 16 25 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 29 H 0.12 4.40 8.05 -2.91 -0.02 4.37 16 30 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.08 4.44 7.76 -2.91 -0.02 4.42 16 32 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 Total: -1.00 -61.12 253.84 3.04 -58.07 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.10 Total: 18.88 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 3.04 Total: -46.44 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -3.12 Total: -72.70 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -61.12 3.04 -58.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214458949.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.865 kcal (2) G-P(sol) polarization free energy of solvation -61.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds