Wall clock time and date at job start Mon Mar 30 2020 02:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46471 * 2 1 4 4 C 1.48023 * 111.00110 * 54.91716 * 3 2 1 5 5 C 1.51272 * 105.69820 * 147.15537 * 4 3 2 6 6 C 1.38663 * 131.50305 * 162.41702 * 5 4 3 7 7 C 1.37563 * 120.35789 * 180.02562 * 6 5 4 8 8 C 1.40739 * 119.74609 * 359.97438 * 7 6 5 9 9 C 1.41393 * 120.25603 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00183 * 205.01019 * 9 8 7 11 11 C 1.39944 * 120.00450 * 25.00243 * 9 8 7 12 12 N 1.30820 * 119.99764 * 17.28202 * 11 9 8 13 13 Si 1.86797 * 120.00493 * 197.27737 * 11 9 8 14 14 H 1.48500 * 109.47335 * 265.18729 * 13 11 9 15 15 H 1.48506 * 109.47049 * 25.18312 * 13 11 9 16 16 H 1.48498 * 109.47602 * 145.18092 * 13 11 9 17 17 C 1.40681 * 119.48314 * 0.26645 * 8 7 6 18 18 C 1.37586 * 119.82501 * 359.47067 * 17 8 7 19 19 C 1.48037 * 110.99455 * 169.99878 * 3 2 1 20 20 H 1.08997 * 109.47169 * 60.00381 * 1 2 3 21 21 H 1.09002 * 109.47022 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47574 * 299.99757 * 1 2 3 23 23 H 1.08997 * 109.47123 * 240.00077 * 2 1 3 24 24 H 1.08997 * 109.47169 * 119.99619 * 2 1 3 25 25 H 1.08997 * 110.20627 * 28.10224 * 4 3 2 26 26 H 1.08996 * 110.20069 * 266.21263 * 4 3 2 27 27 H 1.08005 * 119.81540 * 0.02562 * 6 5 4 28 28 H 1.08000 * 120.12509 * 179.97438 * 7 6 5 29 29 H 0.97000 * 120.00351 * 179.97438 * 12 11 9 30 30 H 1.07996 * 120.09034 * 179.73199 * 17 8 7 31 31 H 1.09000 * 110.20663 * 93.79160 * 19 3 2 32 32 H 1.08996 * 110.27359 * 331.92903 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.4474 2.1499 1.1308 5 6 2.5169 3.1390 1.5387 6 6 2.4550 4.2991 2.2956 7 6 3.5913 5.0387 2.5287 8 6 4.8226 4.6137 1.9957 9 6 5.9971 5.3658 2.2280 10 1 6.8239 5.3036 1.5360 11 6 6.0882 6.1910 3.3546 12 7 5.2625 6.0248 4.3556 13 14 7.3888 7.5298 3.4292 14 1 8.5866 7.0171 4.1417 15 1 7.7669 7.9300 2.0499 16 1 6.8470 8.7066 4.1550 17 6 4.8745 3.4381 1.2247 18 6 3.7270 2.7105 1.0083 19 6 3.4796 1.4316 0.2400 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.2177 1.4808 1.9600 26 1 0.5486 2.6775 0.8119 27 1 1.5095 4.6238 2.7044 28 1 3.5387 5.9419 3.1184 29 1 5.3259 6.5965 5.1367 30 1 5.8133 3.1053 0.8074 31 1 4.0166 1.4518 -0.7083 32 1 3.7927 0.5711 0.8312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214459400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:30 Heat of formation + Delta-G solvation = 5.983558 kcal Electronic energy + Delta-G solvation = -14045.313288 eV Core-core repulsion = 11776.394035 eV Total energy + Delta-G solvation = -2268.919253 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.83067 -38.07311 -35.46347 -33.03663 -32.11260 -29.90837 -28.85821 -26.64699 -24.62111 -22.23718 -21.92688 -21.48951 -18.90181 -17.13254 -16.94088 -16.65562 -15.88373 -15.53022 -15.00331 -14.56768 -14.35477 -14.08694 -13.73578 -13.36389 -13.17601 -12.89869 -12.80101 -12.49367 -12.42099 -12.15875 -12.12196 -11.84851 -11.61465 -11.14517 -10.99255 -9.69530 -9.37629 -8.93642 -8.66185 -6.35567 0.90699 1.03121 1.38140 1.48052 1.54384 2.20435 2.67755 3.09795 3.63601 3.79506 3.92510 4.24408 4.32469 4.47198 4.55005 4.57798 4.63869 4.73826 4.81314 4.93929 5.00918 5.10999 5.15383 5.29369 5.31354 5.44829 5.66496 5.70703 5.90436 6.06170 6.19770 6.21158 6.32112 6.65601 6.90843 6.99082 8.31982 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.076658 B = 0.006435 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.172694 B = 4349.912508 C = 4611.012935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.036 3.964 3 N -0.515 5.515 4 C 0.109 3.891 5 C -0.240 4.240 6 C -0.087 4.087 7 C -0.188 4.188 8 C 0.082 3.918 9 C -0.500 4.500 10 H 0.076 0.924 11 C 0.036 3.964 12 N -0.826 5.826 13 Si 0.984 3.016 14 H -0.262 1.262 15 H -0.259 1.259 16 H -0.265 1.265 17 C -0.222 4.222 18 C -0.091 4.091 19 C 0.088 3.912 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.051 0.949 23 H 0.089 0.911 24 H 0.035 0.965 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.289 0.711 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.982 -6.554 -3.965 9.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 N -0.239 5.239 4 C -0.018 4.018 5 C -0.242 4.242 6 C -0.106 4.106 7 C -0.208 4.208 8 C 0.080 3.920 9 C -0.529 4.529 10 H 0.094 0.906 11 C -0.179 4.179 12 N -0.452 5.452 13 Si 0.804 3.196 14 H -0.186 1.186 15 H -0.183 1.183 16 H -0.189 1.189 17 C -0.242 4.242 18 C -0.092 4.092 19 C -0.040 4.040 20 H 0.080 0.920 21 H 0.099 0.901 22 H 0.070 0.930 23 H 0.108 0.892 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.212 -6.292 -4.264 9.216 hybrid contribution 0.907 0.365 1.148 1.508 sum -4.306 -5.926 -3.116 7.960 Atomic orbital electron populations 1.21807 0.93397 1.02890 1.02302 1.22458 0.97338 0.87882 1.01469 1.65259 1.03965 1.13613 1.41057 1.21200 0.95813 0.93418 0.91401 1.20369 0.96053 1.00055 1.07692 1.20295 0.97492 0.94524 0.98240 1.21215 0.92136 1.01401 1.06015 1.17889 0.93590 0.90508 0.90020 1.19815 1.01318 1.23626 1.08130 0.90583 1.26776 0.98876 0.98742 0.93512 1.69871 1.35650 1.34795 1.04924 0.85167 0.77744 0.77069 0.79572 1.18627 1.18268 1.18904 1.20505 0.96479 0.97543 1.09710 1.20459 0.93987 0.96509 0.98213 1.21498 0.89956 0.93720 0.98793 0.92003 0.90079 0.93028 0.89247 0.94673 0.93410 0.90168 0.87291 0.87643 0.90043 0.88584 0.89426 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.71 71.98 0.70 -2.28 16 2 C 0.04 0.89 5.61 86.30 0.48 1.38 16 3 N -0.51 -17.01 5.58 -897.01 -5.01 -22.01 16 4 C 0.11 3.89 5.20 85.52 0.44 4.34 16 5 C -0.24 -10.88 6.28 -19.42 -0.12 -11.00 16 6 C -0.09 -4.21 10.02 22.21 0.22 -3.99 16 7 C -0.19 -10.27 8.69 22.72 0.20 -10.08 16 8 C 0.08 4.61 5.57 -21.29 -0.12 4.49 16 9 C -0.50 -27.64 9.06 23.46 0.21 -27.43 16 10 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 11 C 0.04 1.83 5.15 85.26 0.44 2.27 16 12 N -0.83 -43.89 10.96 21.83 0.24 -43.65 16 13 Si 0.98 38.56 29.59 68.60 2.03 40.59 16 14 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 15 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 16 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 17 C -0.22 -11.46 9.79 22.71 0.22 -11.24 16 18 C -0.09 -4.20 6.24 -19.69 -0.12 -4.33 16 19 C 0.09 3.18 6.61 85.51 0.56 3.75 16 20 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 21 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.05 1.10 6.80 -2.39 -0.02 1.09 16 23 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.03 0.86 7.82 -2.39 -0.02 0.85 16 25 H 0.05 1.61 7.40 -2.39 -0.02 1.59 16 26 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 28 H 0.11 5.95 6.18 -2.91 -0.02 5.94 16 29 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 30 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.06 1.98 7.61 -2.39 -0.02 1.96 16 Total: -1.00 -60.42 264.21 1.48 -58.94 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.10 Total: 20.25 kcal Atomic # 6 Polarization: -57.24 SS G_CDS: 3.12 Total: -54.12 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -4.77 Total: -65.67 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -60.42 1.48 -58.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214459400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.926 kcal (2) G-P(sol) polarization free energy of solvation -60.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds