Wall clock time and date at job start Mon Mar 30 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86801 * 119.99692 * 2 1 4 4 H 1.48495 * 109.47332 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47106 * 120.00233 * 3 2 1 6 6 H 1.48502 * 109.46921 * 239.99891 * 3 2 1 7 7 C 1.39891 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99729 * 206.52942 * 7 2 1 9 9 C 1.41081 * 119.99901 * 26.52983 * 7 2 1 10 10 C 1.40802 * 120.24358 * 25.35099 * 9 7 2 11 11 C 1.36548 * 119.97370 * 179.97438 * 10 9 7 12 12 F 1.35099 * 119.76509 * 179.97438 * 11 10 9 13 13 C 1.39330 * 120.47213 * 359.97370 * 11 10 9 14 14 F 1.35106 * 119.75216 * 180.02562 * 13 11 10 15 15 C 1.38704 * 120.49057 * 0.02562 * 13 11 10 16 16 F 1.35088 * 119.99187 * 179.97438 * 15 13 11 17 17 C 1.38506 * 120.01202 * 359.74202 * 15 13 11 18 18 O 1.35737 * 120.23379 * 180.27649 * 17 15 13 19 19 H 0.97002 * 119.99907 * 185.88627 * 1 2 3 20 20 H 1.07998 * 120.01037 * 359.95055 * 10 9 7 21 21 H 0.96698 * 113.99946 * 270.21176 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 1.2779 2.7465 -0.0006 5 1 3.0967 1.6965 1.2125 6 1 3.0967 1.6964 -1.2125 7 6 2.0085 -1.2115 0.0005 8 1 3.0032 -1.2605 0.4183 9 6 1.4145 -2.3692 -0.5447 10 6 0.4155 -2.2566 -1.5305 11 6 -0.1553 -3.3808 -2.0548 12 9 -1.1138 -3.2679 -3.0002 13 6 0.2438 -4.6436 -1.6219 14 9 -0.3304 -5.7462 -2.1509 15 6 1.2261 -4.7771 -0.6517 16 9 1.6049 -6.0063 -0.2390 17 6 1.8220 -3.6504 -0.1096 18 8 2.7877 -3.7759 0.8359 19 1 -0.4850 -0.8356 0.0862 20 1 0.1006 -1.2815 -1.8715 21 1 2.4509 -3.7938 1.7422 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214467806.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:12 Heat of formation + Delta-G solvation = -192.888349 kcal Electronic energy + Delta-G solvation = -14451.601286 eV Core-core repulsion = 11262.816709 eV Total energy + Delta-G solvation = -3188.784578 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -50.46630 -50.05555 -49.15344 -40.15591 -37.38156 -35.80441 -31.26353 -30.32589 -27.26717 -23.81138 -23.51432 -20.49773 -19.52431 -18.79792 -18.45749 -17.73716 -17.34373 -16.74020 -16.39736 -15.89702 -15.80673 -15.59704 -15.27674 -15.13072 -14.83666 -14.14247 -13.42733 -13.08870 -12.54186 -12.24139 -12.06776 -11.88716 -11.46525 -11.01019 -9.82902 -9.74169 -9.39811 -6.81785 0.10954 0.14883 1.51962 1.57178 1.85400 2.18146 2.26687 2.73614 2.91432 3.33116 3.53898 3.66645 4.06860 4.27682 4.75000 5.02482 5.07610 5.21739 5.45557 5.68554 5.84591 6.15873 6.44553 6.94750 7.71289 Molecular weight = 218.03amu Principal moments of inertia in cm(-1) A = 0.035645 B = 0.011425 C = 0.008961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.324873 B = 2450.195173 C = 3123.849324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.007 3.993 3 Si 1.119 2.881 4 H -0.270 1.270 5 H -0.250 1.250 6 H -0.261 1.261 7 C -0.467 4.467 8 H 0.103 0.897 9 C 0.078 3.922 10 C -0.242 4.242 11 C 0.132 3.868 12 F -0.142 7.142 13 C -0.142 4.142 14 F -0.152 7.152 15 C 0.112 3.888 16 F -0.137 7.137 17 C -0.045 4.045 18 O -0.480 6.480 19 H 0.294 0.706 20 H 0.130 0.870 21 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 1.573 1.670 3.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.215 4.215 3 Si 0.934 3.066 4 H -0.194 1.194 5 H -0.174 1.174 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.121 0.879 9 C 0.073 3.927 10 C -0.262 4.262 11 C 0.112 3.888 12 F -0.121 7.121 13 C -0.163 4.163 14 F -0.131 7.131 15 C 0.091 3.909 16 F -0.116 7.116 17 C -0.092 4.092 18 O -0.289 6.289 19 H 0.106 0.894 20 H 0.148 0.852 21 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.266 3.090 1.106 3.988 hybrid contribution -0.699 -2.550 0.165 2.649 sum 1.567 0.540 1.271 2.089 Atomic orbital electron populations 1.70618 1.09031 1.34304 1.25279 1.28773 0.95413 1.07796 0.89505 0.82957 0.74841 0.69013 0.79765 1.19434 1.17385 1.18539 1.21000 1.03853 0.93370 1.30982 0.87909 1.17723 0.90827 0.92580 0.91538 1.20650 1.05937 0.96541 1.03047 1.16916 0.89618 0.92446 0.89853 1.91409 1.61444 1.96875 1.62380 1.16756 1.07951 0.82099 1.09532 1.91320 1.84288 1.51347 1.86180 1.17597 0.96138 0.79969 0.97201 1.91385 1.90207 1.40785 1.89186 1.17978 1.00863 0.89739 1.00589 1.84744 1.31086 1.95227 1.17846 0.89351 0.85194 0.75891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.20 12.32 21.82 0.27 -34.93 14 2 C 0.01 0.29 4.90 85.23 0.42 0.71 14 3 Si 1.12 35.25 30.01 68.60 2.06 37.31 14 4 H -0.27 -8.52 7.11 99.48 0.71 -7.82 14 5 H -0.25 -7.10 7.11 99.48 0.71 -6.40 14 6 H -0.26 -7.91 7.11 99.48 0.71 -7.20 14 7 C -0.47 -21.07 8.63 23.37 0.20 -20.87 14 8 H 0.10 4.49 7.72 -2.91 -0.02 4.47 14 9 C 0.08 3.69 5.30 -21.20 -0.11 3.58 14 10 C -0.24 -11.41 7.89 22.50 0.18 -11.24 14 11 C 0.13 6.21 7.25 22.14 0.16 6.37 14 12 F -0.14 -6.44 17.16 44.97 0.77 -5.66 14 13 C -0.14 -6.76 7.33 22.64 0.17 -6.59 14 14 F -0.15 -7.15 17.07 44.97 0.77 -6.38 14 15 C 0.11 5.20 7.31 22.45 0.16 5.37 14 16 F -0.14 -6.11 17.01 44.97 0.77 -5.34 14 17 C -0.04 -2.04 6.75 23.09 0.16 -1.89 14 18 O -0.48 -19.66 12.66 -90.61 -1.15 -20.81 14 19 H 0.29 13.93 6.78 -92.71 -0.63 13.30 14 20 H 0.13 6.17 6.52 -2.91 -0.02 6.15 14 21 H 0.39 12.26 9.06 -74.06 -0.67 11.59 14 Total: -1.00 -51.87 212.98 5.60 -46.27 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.78 Total: 14.09 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 1.33 Total: -24.55 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.27 Total: -34.93 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -1.15 Total: -20.81 kcal Atomic # 9 Polarization: -19.69 SS G_CDS: 2.30 Total: -17.39 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.06 Total: 37.31 kcal Total: -51.87 5.60 -46.27 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214467806.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.616 kcal (2) G-P(sol) polarization free energy of solvation -51.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds