Wall clock time and date at job start Mon Mar 30 2020 02:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35971 * 116.99738 * 2 1 4 4 C 1.39315 * 119.89020 * 359.97438 * 3 2 1 5 5 C 1.37998 * 120.68566 * 179.97438 * 4 3 2 6 6 C 1.38719 * 120.14239 * 0.04333 * 5 4 3 7 7 O 1.35151 * 132.63776 * 179.66711 * 6 5 4 8 8 C 1.35125 * 109.92326 * 179.88082 * 7 6 5 9 9 C 1.39717 * 125.53628 * 180.13963 * 8 7 6 10 10 H 1.08005 * 119.99450 * 180.31007 * 9 8 7 11 11 C 1.40262 * 120.00239 * 0.31547 * 9 8 7 12 12 N 1.30711 * 119.99991 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99917 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46917 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47187 * 119.99547 * 13 11 9 16 16 H 1.48506 * 109.46889 * 239.99653 * 13 11 9 17 17 C 1.39022 * 108.91954 * 0.40953 * 8 7 6 18 18 C 1.41015 * 119.43660 * 359.97438 * 6 5 4 19 19 C 1.37957 * 119.88777 * 180.02562 * 3 2 1 20 20 H 1.09008 * 109.46785 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47086 * 299.99140 * 1 2 3 22 22 H 1.09001 * 109.47835 * 60.00067 * 1 2 3 23 23 H 1.08004 * 119.66273 * 359.97438 * 4 3 2 24 24 H 1.08003 * 119.93119 * 180.02562 * 5 4 3 25 25 H 0.97005 * 119.99528 * 180.02562 * 12 11 9 26 26 H 1.08001 * 126.69032 * 179.76975 * 17 8 7 27 27 H 1.08000 * 120.20683 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2852 2.3784 -0.0005 5 6 1.8945 3.6166 0.0000 6 6 3.2784 3.7119 0.0001 7 8 4.1234 4.7667 -0.0052 8 6 5.4027 4.3319 0.0005 9 6 6.5375 5.1470 0.0002 10 1 7.5217 4.7023 -0.0001 11 6 6.3985 6.5427 0.0003 12 7 5.2073 7.0808 0.0002 13 14 7.9157 7.6324 0.0006 14 1 9.1345 6.7840 0.0013 15 1 7.9097 8.4898 -1.2118 16 1 7.9092 8.4897 1.2132 17 6 5.4063 2.9417 0.0004 18 6 4.0542 2.5344 0.0003 19 6 3.4241 1.2811 -0.0005 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3635 0.5138 -0.8900 23 1 0.2071 2.3135 -0.0014 24 1 1.2926 4.5134 0.0000 25 1 5.1112 8.0461 -0.0001 26 1 6.2740 2.2986 0.0008 27 1 4.0138 0.3763 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214474770.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:20 Heat of formation + Delta-G solvation = -32.181987 kcal Electronic energy + Delta-G solvation = -13845.288925 eV Core-core repulsion = 11341.162933 eV Total energy + Delta-G solvation = -2504.125992 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.67771 -38.75291 -35.43037 -33.84807 -31.45382 -29.24725 -28.77252 -26.50081 -25.39722 -21.74894 -20.81505 -19.85093 -18.05840 -16.85121 -16.15437 -15.40509 -15.20349 -15.00375 -14.32546 -14.05360 -13.17598 -12.70199 -12.50377 -12.09807 -11.69485 -11.48928 -11.43068 -11.29965 -11.26027 -10.85905 -10.32682 -10.12498 -9.67554 -9.66667 -8.89281 -7.24601 -7.16398 -6.95352 -4.71418 2.08307 2.57837 2.81865 2.89231 2.96189 3.65500 3.69711 3.88164 4.51512 4.78640 5.03608 5.38025 5.46144 5.65241 5.72747 5.88120 6.13198 6.44482 6.59319 6.66648 6.73375 7.07060 7.13582 7.26984 7.34062 7.57535 7.76537 7.85560 8.13582 8.32372 8.40205 8.96527 9.80354 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.085193 B = 0.006639 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.587258 B = 4216.464399 C = 4529.906008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.327 6.327 3 C 0.117 3.883 4 C -0.260 4.260 5 C -0.053 4.053 6 C -0.049 4.049 7 O -0.171 6.171 8 C 0.247 3.753 9 C -0.422 4.422 10 H 0.113 0.887 11 C 0.063 3.937 12 N -0.754 5.754 13 Si 0.930 3.070 14 H -0.254 1.254 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.424 4.424 18 C -0.008 4.008 19 C -0.187 4.187 20 H 0.088 0.912 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.116 0.884 24 H 0.113 0.887 25 H 0.291 0.709 26 H 0.123 0.877 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.852 -2.820 0.001 4.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.242 6.242 3 C 0.073 3.927 4 C -0.279 4.279 5 C -0.072 4.072 6 C -0.095 4.095 7 O -0.072 6.072 8 C 0.196 3.804 9 C -0.449 4.449 10 H 0.131 0.869 11 C -0.161 4.161 12 N -0.377 5.377 13 Si 0.753 3.247 14 H -0.178 1.178 15 H -0.193 1.193 16 H -0.193 1.193 17 C -0.444 4.444 18 C -0.009 4.009 19 C -0.206 4.206 20 H 0.107 0.893 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.134 0.866 24 H 0.131 0.869 25 H 0.102 0.898 26 H 0.141 0.859 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.019 -2.524 -0.001 4.746 hybrid contribution 0.293 0.542 0.003 0.616 sum -3.726 -1.982 0.002 4.221 Atomic orbital electron populations 1.22854 0.79885 1.02520 1.00926 1.85989 1.20193 1.28052 1.89970 1.18508 0.91759 0.83128 0.99311 1.20358 0.98214 0.91250 1.18123 1.19368 0.89744 0.96827 1.01255 1.19692 0.91942 0.86403 1.11466 1.84640 1.14949 1.30438 1.77223 1.19603 0.81772 0.91065 0.87971 1.19125 0.92409 0.90149 1.43242 0.86879 1.26346 0.98371 0.99380 0.92007 1.69741 1.24182 1.14225 1.29553 0.85875 0.80490 0.79333 0.79022 1.17763 1.19275 1.19279 1.20959 0.94091 0.93431 1.35925 1.18512 0.94155 0.91921 0.96352 1.19362 0.90490 0.96254 1.14526 0.89349 0.93274 0.93265 0.86596 0.86910 0.89801 0.85852 0.86931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 15 2 O -0.33 -6.08 10.49 -19.65 -0.21 -6.28 15 3 C 0.12 2.48 6.68 -39.28 -0.26 2.22 15 4 C -0.26 -5.27 9.02 -39.27 -0.35 -5.62 15 5 C -0.05 -1.19 10.05 -39.49 -0.40 -1.59 15 6 C -0.05 -1.27 7.37 -38.35 -0.28 -1.55 15 7 O -0.17 -4.85 8.90 1.00 0.01 -4.84 15 8 C 0.25 6.81 6.75 -38.74 -0.26 6.55 15 9 C -0.42 -10.76 9.30 -38.27 -0.36 -11.12 15 10 H 0.11 2.64 7.85 -52.48 -0.41 2.23 15 11 C 0.06 1.51 5.50 -17.27 -0.09 1.41 15 12 N -0.75 -18.99 11.96 55.57 0.66 -18.33 15 13 Si 0.93 17.19 29.56 -169.99 -5.03 12.17 15 14 H -0.25 -4.57 7.11 56.52 0.40 -4.17 15 15 H -0.27 -4.86 7.11 56.52 0.40 -4.45 15 16 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 17 C -0.42 -11.18 10.94 -38.16 -0.42 -11.60 15 18 C -0.01 -0.21 6.17 -106.95 -0.66 -0.87 15 19 C -0.19 -4.36 10.06 -38.92 -0.39 -4.75 15 20 H 0.09 0.90 8.14 -51.92 -0.42 0.47 15 21 H 0.05 0.60 7.65 -51.93 -0.40 0.21 15 22 H 0.05 0.60 7.65 -51.93 -0.40 0.21 15 23 H 0.12 1.93 6.26 -52.48 -0.33 1.60 15 24 H 0.11 2.26 8.06 -52.48 -0.42 1.84 15 25 H 0.29 6.47 8.29 -40.82 -0.34 6.13 15 26 H 0.12 3.01 8.06 -52.49 -0.42 2.59 15 27 H 0.11 2.44 8.06 -52.49 -0.42 2.02 15 LS Contribution 243.89 15.07 3.68 3.68 Total: -1.00 -29.16 243.89 -5.73 -34.88 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -2.36 Total: 4.22 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -2.49 Total: -25.49 kcal Atomic # 7 Polarization: -18.99 SS G_CDS: 0.66 Total: -18.33 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.20 Total: -11.13 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.16 -5.73 -34.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214474770.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.703 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds