Wall clock time and date at job start Mon Mar 30 2020 02:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35971 * 116.99738 * 2 1 4 4 C 1.39315 * 119.89020 * 359.97438 * 3 2 1 5 5 C 1.37998 * 120.68566 * 179.97438 * 4 3 2 6 6 C 1.38719 * 120.14239 * 0.04333 * 5 4 3 7 7 O 1.35151 * 132.63776 * 179.66711 * 6 5 4 8 8 C 1.35125 * 109.92326 * 179.88082 * 7 6 5 9 9 C 1.39717 * 125.53628 * 180.13963 * 8 7 6 10 10 H 1.08005 * 119.99450 * 180.31007 * 9 8 7 11 11 C 1.40262 * 120.00239 * 0.31547 * 9 8 7 12 12 N 1.30711 * 119.99991 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99917 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46917 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47187 * 119.99547 * 13 11 9 16 16 H 1.48506 * 109.46889 * 239.99653 * 13 11 9 17 17 C 1.39022 * 108.91954 * 0.40953 * 8 7 6 18 18 C 1.41015 * 119.43660 * 359.97438 * 6 5 4 19 19 C 1.37957 * 119.88777 * 180.02562 * 3 2 1 20 20 H 1.09008 * 109.46785 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47086 * 299.99140 * 1 2 3 22 22 H 1.09001 * 109.47835 * 60.00067 * 1 2 3 23 23 H 1.08004 * 119.66273 * 359.97438 * 4 3 2 24 24 H 1.08003 * 119.93119 * 180.02562 * 5 4 3 25 25 H 0.97005 * 119.99528 * 180.02562 * 12 11 9 26 26 H 1.08001 * 126.69032 * 179.76975 * 17 8 7 27 27 H 1.08000 * 120.20683 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2852 2.3784 -0.0005 5 6 1.8945 3.6166 0.0000 6 6 3.2784 3.7119 0.0001 7 8 4.1234 4.7667 -0.0052 8 6 5.4027 4.3319 0.0005 9 6 6.5375 5.1470 0.0002 10 1 7.5217 4.7023 -0.0001 11 6 6.3985 6.5427 0.0003 12 7 5.2073 7.0808 0.0002 13 14 7.9157 7.6324 0.0006 14 1 9.1345 6.7840 0.0013 15 1 7.9097 8.4898 -1.2118 16 1 7.9092 8.4897 1.2132 17 6 5.4063 2.9417 0.0004 18 6 4.0542 2.5344 0.0003 19 6 3.4241 1.2811 -0.0005 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3635 0.5138 -0.8900 23 1 0.2071 2.3135 -0.0014 24 1 1.2926 4.5134 0.0000 25 1 5.1112 8.0461 -0.0001 26 1 6.2740 2.2986 0.0008 27 1 4.0138 0.3763 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214474770.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:20 Heat of formation + Delta-G solvation = -49.960833 kcal Electronic energy + Delta-G solvation = -13846.059873 eV Core-core repulsion = 11341.162933 eV Total energy + Delta-G solvation = -2504.896940 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.58097 -40.30863 -37.14257 -35.68780 -33.33282 -31.02027 -30.51613 -27.82555 -27.20047 -23.55091 -22.57235 -21.78051 -19.86295 -18.45393 -17.98624 -17.17043 -16.62903 -16.50538 -16.20144 -15.70335 -14.93378 -14.33175 -14.05879 -13.75552 -13.23630 -13.20224 -13.10628 -12.94987 -12.85546 -12.44567 -11.89349 -11.68319 -11.41303 -11.37995 -10.76219 -9.13258 -8.94949 -8.74509 -6.65735 0.28452 0.77592 1.30013 1.37108 1.57714 1.90769 2.11580 2.45091 2.68588 2.95091 3.12697 3.95913 4.23319 4.29843 4.48706 4.51122 4.66605 4.75439 4.81402 4.87789 4.94843 5.25614 5.31695 5.42371 5.53883 5.72590 5.89674 6.01443 6.37111 6.46665 6.63839 7.00962 8.05798 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.085193 B = 0.006639 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.587258 B = 4216.464399 C = 4529.906008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.127 3.873 4 C -0.240 4.240 5 C -0.056 4.056 6 C -0.093 4.093 7 O -0.195 6.195 8 C 0.214 3.786 9 C -0.449 4.449 10 H 0.125 0.875 11 C 0.020 3.980 12 N -0.793 5.793 13 Si 1.014 2.986 14 H -0.245 1.245 15 H -0.259 1.259 16 H -0.259 1.259 17 C -0.453 4.453 18 C -0.030 4.030 19 C -0.205 4.205 20 H 0.122 0.878 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.162 0.838 24 H 0.135 0.865 25 H 0.302 0.698 26 H 0.128 0.872 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 -2.962 0.001 5.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.082 3.918 4 C -0.259 4.259 5 C -0.074 4.074 6 C -0.139 4.139 7 O -0.097 6.097 8 C 0.163 3.837 9 C -0.475 4.475 10 H 0.143 0.857 11 C -0.200 4.200 12 N -0.417 5.417 13 Si 0.831 3.169 14 H -0.168 1.168 15 H -0.183 1.183 16 H -0.183 1.183 17 C -0.474 4.474 18 C -0.031 4.031 19 C -0.224 4.224 20 H 0.140 0.860 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.180 0.820 24 H 0.153 0.847 25 H 0.113 0.887 26 H 0.146 0.854 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.237 -2.705 -0.001 5.894 hybrid contribution 0.392 0.398 0.002 0.559 sum -4.845 -2.307 0.002 5.366 Atomic orbital electron populations 1.23327 0.76615 1.05413 1.02175 1.86000 1.23443 1.26373 1.89308 1.18577 0.91288 0.84677 0.97266 1.20853 1.00382 0.89793 1.14824 1.19819 0.88492 0.98826 1.00303 1.20301 0.93402 0.86155 1.14028 1.84559 1.15492 1.31670 1.78018 1.20127 0.82306 0.91963 0.89290 1.19597 0.92420 0.91534 1.43979 0.85742 1.27463 1.01981 1.00088 0.90510 1.69803 1.26752 1.15362 1.29783 0.84671 0.75798 0.76927 0.79466 1.16823 1.18289 1.18296 1.21147 0.94968 0.93546 1.37713 1.18739 0.94045 0.93067 0.97271 1.19562 0.92077 0.95594 1.15185 0.85955 0.91921 0.91910 0.82031 0.84680 0.88673 0.85363 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 15 2 O -0.34 -11.42 10.49 -93.22 -0.98 -12.40 15 3 C 0.13 5.13 6.68 22.46 0.15 5.28 15 4 C -0.24 -9.01 9.02 22.47 0.20 -8.80 15 5 C -0.06 -2.45 10.05 22.33 0.22 -2.22 15 6 C -0.09 -5.02 7.37 23.07 0.17 -4.85 15 7 O -0.20 -11.59 8.90 -19.33 -0.17 -11.76 15 8 C 0.21 12.43 6.75 22.82 0.15 12.59 15 9 C -0.45 -23.78 9.30 23.12 0.21 -23.56 15 10 H 0.12 6.02 7.85 -2.91 -0.02 5.99 15 11 C 0.02 0.97 5.50 85.35 0.47 1.44 15 12 N -0.79 -40.92 11.96 21.89 0.26 -40.66 15 13 Si 1.01 34.89 29.56 68.60 2.03 36.92 15 14 H -0.25 -8.00 7.11 99.48 0.71 -7.29 15 15 H -0.26 -8.46 7.11 99.48 0.71 -7.75 15 16 H -0.26 -8.46 7.11 99.48 0.71 -7.75 15 17 C -0.45 -25.30 10.94 23.19 0.25 -25.04 15 18 C -0.03 -1.62 6.17 -21.37 -0.13 -1.75 15 19 C -0.20 -9.60 10.06 22.70 0.23 -9.37 15 20 H 0.12 1.87 8.14 -2.38 -0.02 1.85 15 21 H 0.06 1.22 7.65 -2.39 -0.02 1.21 15 22 H 0.06 1.23 7.65 -2.39 -0.02 1.21 15 23 H 0.16 4.54 6.26 -2.91 -0.02 4.52 15 24 H 0.14 5.20 8.06 -2.91 -0.02 5.18 15 25 H 0.30 13.60 8.29 -92.70 -0.77 12.83 15 26 H 0.13 6.67 8.06 -2.91 -0.02 6.65 15 27 H 0.12 5.26 8.06 -2.91 -0.02 5.23 15 Total: -1.00 -66.17 243.89 5.37 -60.80 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 1.18 Total: 21.87 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 3.05 Total: -54.77 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.26 Total: -40.66 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.15 Total: -24.16 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Total: -66.17 5.37 -60.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214474770.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.840 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds