Wall clock time and date at job start Mon Mar 30 2020 02:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35773 * 116.99997 * 2 1 4 4 C 1.39444 * 119.70107 * 359.97438 * 3 2 1 5 5 C 1.36375 * 120.41049 * 180.02562 * 4 3 2 6 6 C 1.40390 * 119.81812 * 359.97438 * 5 4 3 7 7 C 1.41097 * 133.44969 * 180.02562 * 6 5 4 8 8 C 1.39058 * 106.63243 * 179.97438 * 7 6 5 9 9 C 1.39678 * 125.53416 * 179.97438 * 8 7 6 10 10 H 1.07991 * 120.00092 * 0.02562 * 9 8 7 11 11 C 1.40202 * 119.99959 * 180.02562 * 9 8 7 12 12 N 1.30765 * 120.00124 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00105 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47028 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47566 * 120.00382 * 13 11 9 16 16 H 1.48512 * 109.47263 * 240.00244 * 13 11 9 17 17 O 1.35151 * 108.92986 * 359.97438 * 8 7 6 18 18 C 1.35069 * 109.89845 * 359.97438 * 17 8 7 19 19 C 1.38522 * 132.73454 * 180.02562 * 18 17 8 20 20 H 1.09002 * 109.47435 * 59.99412 * 1 2 3 21 21 H 1.08998 * 109.47547 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46670 * 300.00229 * 1 2 3 23 23 H 1.08004 * 119.79909 * 0.02777 * 4 3 2 24 24 H 1.08004 * 120.09434 * 179.70191 * 5 4 3 25 25 H 1.08001 * 126.67876 * 359.94942 * 7 6 5 26 26 H 0.97000 * 120.00241 * 179.97438 * 12 11 9 27 27 H 1.08004 * 120.05188 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2798 2.3752 -0.0005 5 6 1.8838 3.5979 -0.0011 6 6 3.2851 3.6843 -0.0005 7 6 4.1906 4.7664 -0.0004 8 6 5.4678 4.2166 0.0008 9 6 6.6629 4.9397 0.0008 10 1 6.6408 6.0193 0.0003 11 6 7.8912 4.2637 0.0016 12 7 7.9181 2.9563 0.0018 13 14 9.4894 5.2307 0.0024 14 1 9.1882 6.6848 0.0014 15 1 10.2748 4.8881 1.2153 16 1 10.2760 4.8878 -1.2098 17 8 5.3651 2.8690 0.0020 18 6 4.0638 2.5072 0.0021 19 6 3.4307 1.2751 0.0036 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2018 2.3093 -0.0005 24 1 1.2859 4.4973 -0.0064 25 1 3.9403 5.8170 -0.0015 26 1 8.7679 2.4887 0.0019 27 1 4.0150 0.3667 0.0045 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214474865.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:35 Heat of formation + Delta-G solvation = -29.902246 kcal Electronic energy + Delta-G solvation = -13867.211998 eV Core-core repulsion = 11363.184863 eV Total energy + Delta-G solvation = -2504.027135 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.72363 -38.76125 -35.50899 -33.82606 -31.25823 -29.48619 -28.76755 -26.85107 -24.96756 -21.82043 -20.83401 -19.87337 -18.06117 -17.04799 -15.87666 -15.23547 -15.21121 -14.94967 -14.33828 -14.26168 -13.34608 -12.83842 -12.53966 -12.13611 -11.68959 -11.45237 -11.44681 -11.26469 -11.11086 -10.75728 -10.24943 -10.23149 -9.75034 -9.72941 -8.56298 -7.57328 -7.10727 -6.90568 -4.60035 2.10344 2.49630 2.84365 2.92021 2.98740 3.68129 3.71858 3.73349 4.72456 4.77474 5.06239 5.38333 5.45631 5.62775 5.66390 5.75496 6.14047 6.33896 6.53653 6.75051 6.80433 6.93668 7.11281 7.28473 7.44903 7.54159 7.74844 7.86628 8.16459 8.34533 8.44311 8.95876 9.86567 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.070282 B = 0.006911 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.300508 B = 4050.565216 C = 4433.721505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.325 6.325 3 C 0.059 3.941 4 C -0.196 4.196 5 C -0.116 4.116 6 C -0.066 4.066 7 C -0.421 4.421 8 C 0.239 3.761 9 C -0.427 4.427 10 H 0.112 0.888 11 C 0.064 3.936 12 N -0.759 5.759 13 Si 0.929 3.071 14 H -0.255 1.255 15 H -0.268 1.268 16 H -0.269 1.269 17 O -0.167 6.167 18 C 0.011 3.989 19 C -0.117 4.117 20 H 0.047 0.953 21 H 0.088 0.912 22 H 0.047 0.953 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.122 0.878 26 H 0.290 0.710 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 -1.415 -0.001 5.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.240 6.240 3 C 0.016 3.984 4 C -0.215 4.215 5 C -0.134 4.134 6 C -0.067 4.067 7 C -0.442 4.442 8 C 0.189 3.811 9 C -0.454 4.454 10 H 0.130 0.870 11 C -0.160 4.160 12 N -0.382 5.382 13 Si 0.752 3.248 14 H -0.179 1.179 15 H -0.193 1.193 16 H -0.193 1.193 17 O -0.067 6.067 18 C -0.037 4.037 19 C -0.136 4.136 20 H 0.066 0.934 21 H 0.107 0.893 22 H 0.066 0.934 23 H 0.130 0.870 24 H 0.127 0.873 25 H 0.140 0.860 26 H 0.101 0.899 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.862 -2.013 -0.001 5.263 hybrid contribution 0.304 0.572 -0.002 0.648 sum -4.559 -1.441 -0.002 4.781 Atomic orbital electron populations 1.22832 0.79887 1.02520 1.00735 1.85894 1.19994 1.27585 1.90526 1.18048 0.90796 0.83423 1.06171 1.20461 0.98368 0.92343 1.10282 1.19841 0.92545 0.96151 1.04892 1.18797 0.93287 0.93797 1.00868 1.20892 0.90555 0.96952 1.35806 1.19580 0.94246 0.78280 0.89021 1.19037 0.87427 0.94992 1.43988 0.87000 1.26310 1.02386 0.95251 0.92067 1.69756 1.29782 1.08442 1.30240 0.85892 0.79270 0.80647 0.78974 1.17861 1.19335 1.19340 1.84646 1.21837 1.23619 1.76597 1.19251 0.83688 0.93997 1.06717 1.18521 0.90693 0.94758 1.09651 0.93429 0.89316 0.93423 0.86984 0.87325 0.86025 0.89878 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 9.80 101.05 0.99 1.46 15 2 O -0.32 -6.01 10.48 -19.03 -0.20 -6.21 15 3 C 0.06 1.25 6.70 -38.97 -0.26 0.99 15 4 C -0.20 -3.88 8.96 -39.80 -0.36 -4.23 15 5 C -0.12 -2.51 10.07 -39.44 -0.40 -2.91 15 6 C -0.07 -1.69 6.17 -106.90 -0.66 -2.35 15 7 C -0.42 -11.04 10.94 -38.19 -0.42 -11.46 15 8 C 0.24 6.62 6.75 -38.74 -0.26 6.36 15 9 C -0.43 -11.00 9.29 -38.31 -0.36 -11.36 15 10 H 0.11 2.65 7.85 -52.49 -0.41 2.23 15 11 C 0.06 1.54 5.50 -17.27 -0.09 1.44 15 12 N -0.76 -19.44 11.96 55.56 0.66 -18.78 15 13 Si 0.93 17.47 29.56 -169.99 -5.03 12.45 15 14 H -0.26 -4.66 7.11 56.52 0.40 -4.25 15 15 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 16 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 17 O -0.17 -4.75 8.90 1.16 0.01 -4.74 15 18 C 0.01 0.29 7.36 -38.38 -0.28 0.01 15 19 C -0.12 -2.75 9.99 -39.31 -0.39 -3.14 15 20 H 0.05 0.58 7.64 -51.93 -0.40 0.18 15 21 H 0.09 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.05 0.58 7.64 -51.93 -0.40 0.18 15 23 H 0.11 1.81 6.25 -52.48 -0.33 1.48 15 24 H 0.11 2.07 8.06 -52.48 -0.42 1.65 15 25 H 0.12 2.94 8.06 -52.49 -0.42 2.52 15 26 H 0.29 6.59 8.29 -40.82 -0.34 6.25 15 27 H 0.12 2.64 8.06 -52.48 -0.42 2.21 15 LS Contribution 243.73 15.07 3.67 3.67 Total: -1.00 -29.25 243.73 -5.72 -34.97 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -2.36 Total: 3.82 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -2.49 Total: -25.19 kcal Atomic # 7 Polarization: -19.44 SS G_CDS: 0.66 Total: -18.78 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.19 Total: -10.96 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.25 -5.72 -34.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214474865.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.072 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds