Wall clock time and date at job start Mon Mar 30 2020 02:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35773 * 116.99997 * 2 1 4 4 C 1.39444 * 119.70107 * 359.97438 * 3 2 1 5 5 C 1.36375 * 120.41049 * 180.02562 * 4 3 2 6 6 C 1.40390 * 119.81812 * 359.97438 * 5 4 3 7 7 C 1.41097 * 133.44969 * 180.02562 * 6 5 4 8 8 C 1.39058 * 106.63243 * 179.97438 * 7 6 5 9 9 C 1.39678 * 125.53416 * 179.97438 * 8 7 6 10 10 H 1.07991 * 120.00092 * 0.02562 * 9 8 7 11 11 C 1.40202 * 119.99959 * 180.02562 * 9 8 7 12 12 N 1.30765 * 120.00124 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00105 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47028 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47566 * 120.00382 * 13 11 9 16 16 H 1.48512 * 109.47263 * 240.00244 * 13 11 9 17 17 O 1.35151 * 108.92986 * 359.97438 * 8 7 6 18 18 C 1.35069 * 109.89845 * 359.97438 * 17 8 7 19 19 C 1.38522 * 132.73454 * 180.02562 * 18 17 8 20 20 H 1.09002 * 109.47435 * 59.99412 * 1 2 3 21 21 H 1.08998 * 109.47547 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46670 * 300.00229 * 1 2 3 23 23 H 1.08004 * 119.79909 * 0.02777 * 4 3 2 24 24 H 1.08004 * 120.09434 * 179.70191 * 5 4 3 25 25 H 1.08001 * 126.67876 * 359.94942 * 7 6 5 26 26 H 0.97000 * 120.00241 * 179.97438 * 12 11 9 27 27 H 1.08004 * 120.05188 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2798 2.3752 -0.0005 5 6 1.8838 3.5979 -0.0011 6 6 3.2851 3.6843 -0.0005 7 6 4.1906 4.7664 -0.0004 8 6 5.4678 4.2166 0.0008 9 6 6.6629 4.9397 0.0008 10 1 6.6408 6.0193 0.0003 11 6 7.8912 4.2637 0.0016 12 7 7.9181 2.9563 0.0018 13 14 9.4894 5.2307 0.0024 14 1 9.1882 6.6848 0.0014 15 1 10.2748 4.8881 1.2153 16 1 10.2760 4.8878 -1.2098 17 8 5.3651 2.8690 0.0020 18 6 4.0638 2.5072 0.0021 19 6 3.4307 1.2751 0.0036 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2018 2.3093 -0.0005 24 1 1.2859 4.4973 -0.0064 25 1 3.9403 5.8170 -0.0015 26 1 8.7679 2.4887 0.0019 27 1 4.0150 0.3667 0.0045 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214474865.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:35 Heat of formation + Delta-G solvation = -47.891739 kcal Electronic energy + Delta-G solvation = -13867.992081 eV Core-core repulsion = 11363.184863 eV Total energy + Delta-G solvation = -2504.807218 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.62834 -40.32393 -37.20728 -35.67833 -33.11870 -31.23639 -30.58055 -28.16532 -26.71245 -23.61502 -22.58933 -21.79529 -19.87091 -18.71604 -17.55610 -17.01845 -16.67785 -16.55535 -16.17610 -15.90117 -15.09238 -14.49682 -14.01313 -13.84172 -13.20063 -13.09683 -13.03237 -12.93404 -12.80117 -12.34391 -11.85160 -11.79488 -11.47367 -11.47208 -10.40183 -9.38167 -8.90776 -8.76423 -6.53115 0.31915 0.71540 1.30395 1.36980 1.57494 1.91378 2.11070 2.17662 2.95324 3.03209 3.15410 3.92348 4.13903 4.29212 4.49798 4.50704 4.62359 4.73931 4.78098 4.94027 5.02292 5.11706 5.33257 5.46107 5.67368 5.70227 5.88882 6.02337 6.41596 6.51495 6.66342 7.00175 8.10483 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.070282 B = 0.006911 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.300508 B = 4050.565216 C = 4433.721505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.081 3.919 4 C -0.185 4.185 5 C -0.107 4.107 6 C -0.096 4.096 7 C -0.441 4.441 8 C 0.201 3.799 9 C -0.456 4.456 10 H 0.124 0.876 11 C 0.019 3.981 12 N -0.803 5.803 13 Si 1.014 2.986 14 H -0.244 1.244 15 H -0.260 1.260 16 H -0.260 1.260 17 O -0.195 6.195 18 C -0.028 4.028 19 C -0.144 4.144 20 H 0.063 0.937 21 H 0.121 0.879 22 H 0.063 0.937 23 H 0.161 0.839 24 H 0.140 0.860 25 H 0.132 0.868 26 H 0.299 0.701 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 -1.293 -0.003 7.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.252 6.252 3 C 0.037 3.963 4 C -0.204 4.204 5 C -0.126 4.126 6 C -0.097 4.097 7 C -0.462 4.462 8 C 0.151 3.849 9 C -0.484 4.484 10 H 0.142 0.858 11 C -0.201 4.201 12 N -0.428 5.428 13 Si 0.831 3.169 14 H -0.167 1.167 15 H -0.185 1.185 16 H -0.185 1.185 17 O -0.096 6.096 18 C -0.075 4.075 19 C -0.164 4.164 20 H 0.081 0.919 21 H 0.139 0.861 22 H 0.081 0.919 23 H 0.179 0.821 24 H 0.158 0.842 25 H 0.150 0.850 26 H 0.110 0.890 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.543 -1.906 -0.003 6.815 hybrid contribution 0.499 0.340 -0.001 0.604 sum -6.044 -1.566 -0.004 6.244 Atomic orbital electron populations 1.23316 0.76493 1.05384 1.02150 1.85911 1.23376 1.26112 1.89819 1.18185 0.90087 0.85106 1.02953 1.20934 1.00696 0.90819 1.07909 1.20289 0.91120 0.98369 1.02773 1.19104 0.95039 0.92980 1.02551 1.21117 0.90680 0.97720 1.36644 1.20157 0.95709 0.78404 0.90650 1.19499 0.88088 0.95739 1.45056 0.85780 1.27442 1.05964 0.96108 0.90547 1.69840 1.31393 1.10484 1.31062 0.84682 0.73681 0.79214 0.79321 1.16684 1.18463 1.18471 1.84562 1.23444 1.24279 1.77356 1.19770 0.83370 0.95587 1.08727 1.18751 0.92321 0.93937 1.11365 0.91883 0.86078 0.91878 0.82114 0.84219 0.84994 0.88957 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.80 113.37 1.11 1.55 15 2 O -0.34 -11.46 10.48 -91.00 -0.95 -12.41 15 3 C 0.08 3.27 6.70 22.67 0.15 3.42 15 4 C -0.19 -6.68 8.96 22.13 0.20 -6.48 15 5 C -0.11 -4.43 10.07 22.36 0.23 -4.20 15 6 C -0.10 -4.94 6.17 -21.34 -0.13 -5.07 15 7 C -0.44 -24.01 10.94 23.17 0.25 -23.76 15 8 C 0.20 11.73 6.75 22.81 0.15 11.89 15 9 C -0.46 -24.54 9.29 23.10 0.21 -24.32 15 10 H 0.12 6.06 7.85 -2.92 -0.02 6.03 15 11 C 0.02 0.92 5.50 85.33 0.47 1.39 15 12 N -0.80 -42.93 11.96 21.88 0.26 -42.67 15 13 Si 1.01 35.94 29.56 68.60 2.03 37.97 15 14 H -0.24 -8.11 7.11 99.48 0.71 -7.40 15 15 H -0.26 -8.81 7.11 99.48 0.71 -8.10 15 16 H -0.26 -8.81 7.11 99.48 0.71 -8.10 15 17 O -0.19 -11.83 8.90 -18.75 -0.17 -12.00 15 18 C -0.03 -1.51 7.36 23.05 0.17 -1.35 15 19 C -0.14 -6.92 9.99 22.44 0.22 -6.69 15 20 H 0.06 1.19 7.64 -2.39 -0.02 1.17 15 21 H 0.12 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.06 1.19 7.64 -2.39 -0.02 1.17 15 23 H 0.16 4.22 6.25 -2.91 -0.02 4.21 15 24 H 0.14 4.84 8.06 -2.91 -0.02 4.81 15 25 H 0.13 6.58 8.06 -2.91 -0.02 6.56 15 26 H 0.30 14.08 8.29 -92.71 -0.77 13.31 15 27 H 0.12 5.48 8.06 -2.91 -0.02 5.46 15 Total: -1.00 -67.20 243.73 5.39 -61.80 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 1.18 Total: 20.94 kcal Atomic # 6 Polarization: -56.67 SS G_CDS: 3.04 Total: -53.63 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.26 Total: -42.67 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -1.12 Total: -24.41 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -67.20 5.39 -61.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214474865.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.910 kcal (2) G-P(sol) polarization free energy of solvation -67.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds