Wall clock time and date at job start Mon Mar 30 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37707 * 119.85738 * 2 1 4 4 C 1.38929 * 120.23666 * 180.25182 * 3 2 1 5 5 C 1.35951 * 120.65250 * 0.05026 * 4 3 2 6 6 C 1.41898 * 120.47719 * 359.94982 * 5 4 3 7 7 C 1.39799 * 128.54764 * 180.02562 * 6 5 4 8 8 C 1.36941 * 115.02557 * 180.02562 * 7 6 5 9 9 C 1.39927 * 124.82277 * 179.97438 * 8 7 6 10 10 H 1.07995 * 119.99599 * 0.02562 * 9 8 7 11 11 C 1.40187 * 119.99970 * 180.02562 * 9 8 7 12 12 N 1.30754 * 119.99631 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99815 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47272 * 59.99919 * 13 11 9 15 15 H 1.48502 * 109.47127 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47343 * 299.99702 * 13 11 9 17 17 S 1.75453 * 110.35341 * 359.97438 * 8 7 6 18 18 C 1.39605 * 119.86333 * 180.27896 * 2 1 3 19 19 H 1.08998 * 109.46793 * 269.72322 * 1 2 3 20 20 H 1.08997 * 109.46817 * 29.72420 * 1 2 3 21 21 H 1.09001 * 109.46807 * 149.71948 * 1 2 3 22 22 H 1.08004 * 119.88072 * 0.27839 * 3 2 1 23 23 H 1.07994 * 119.67726 * 180.02562 * 4 3 2 24 24 H 1.08003 * 119.76243 * 179.97438 * 5 4 3 25 25 H 1.08002 * 122.48749 * 0.02562 * 7 6 5 26 26 H 0.97008 * 119.99851 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1943 0.0000 4 6 3.5818 1.2035 -0.0053 5 6 4.2827 0.0386 -0.0115 6 6 3.6058 -1.2086 -0.0117 7 6 4.1511 -2.4958 -0.0171 8 6 3.2346 -3.5133 -0.0162 9 6 3.5533 -4.8757 -0.0214 10 1 4.5869 -5.1885 -0.0262 11 6 2.5307 -5.8347 -0.0206 12 7 1.2793 -5.4560 -0.0143 13 14 2.9562 -7.6536 -0.0283 14 1 3.7553 -7.9801 1.1800 15 1 1.7056 -8.4545 -0.0253 16 1 3.7457 -7.9722 -1.2450 17 16 1.6040 -2.8657 -0.0077 18 6 2.2022 -1.2107 -0.0059 19 1 -0.3633 -0.0050 1.0277 20 1 -0.3633 0.8924 -0.5095 21 1 -0.3633 -0.8875 -0.5182 22 1 1.6483 2.1272 0.0046 23 1 4.1103 2.1453 -0.0048 24 1 5.3624 0.0625 -0.0160 25 1 5.2163 -2.6745 -0.0215 26 1 0.5717 -6.1196 -0.0134 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214497229.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:36 Heat of formation + Delta-G solvation = -9.553766 kcal Electronic energy + Delta-G solvation = -11819.489759 eV Core-core repulsion = 9759.097872 eV Total energy + Delta-G solvation = -2060.391888 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.93210 -36.85406 -35.02324 -33.16616 -30.77738 -27.59255 -27.17891 -23.93886 -22.28705 -20.73936 -19.54951 -17.72753 -17.05849 -16.16143 -15.61988 -15.41890 -14.75936 -14.47183 -13.98972 -13.60157 -13.58419 -13.23802 -13.00595 -12.98029 -12.66006 -12.05347 -11.94430 -11.77224 -11.61324 -11.04843 -10.88376 -9.98248 -9.17831 -8.91090 -8.19080 -6.56897 0.34132 0.75369 1.34002 1.34482 1.45855 1.51039 1.86585 1.92199 2.14206 2.86378 3.29709 4.15408 4.25497 4.46508 4.61654 4.77131 4.82745 4.89793 4.97762 5.04527 5.23740 5.44719 5.52551 5.59264 5.83633 5.89758 5.96533 6.09814 6.37059 6.53652 6.58065 7.95387 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.052996 B = 0.009114 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.215719 B = 3071.437427 C = 3584.508145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.041 4.041 3 C -0.192 4.192 4 C -0.100 4.100 5 C -0.178 4.178 6 C -0.011 4.011 7 C -0.401 4.401 8 C 0.023 3.977 9 C -0.418 4.418 10 H 0.100 0.900 11 C 0.018 3.982 12 N -0.800 5.800 13 Si 1.014 2.986 14 H -0.255 1.255 15 H -0.257 1.257 16 H -0.255 1.255 17 S 0.126 5.874 18 C -0.289 4.289 19 H 0.075 0.925 20 H 0.090 0.910 21 H 0.051 0.949 22 H 0.143 0.857 23 H 0.142 0.858 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 2.274 0.029 3.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.045 4.045 3 C -0.212 4.212 4 C -0.120 4.120 5 C -0.198 4.198 6 C -0.019 4.019 7 C -0.426 4.426 8 C -0.096 4.096 9 C -0.451 4.451 10 H 0.118 0.882 11 C -0.201 4.201 12 N -0.426 5.426 13 Si 0.832 3.168 14 H -0.179 1.179 15 H -0.181 1.181 16 H -0.179 1.179 17 S 0.385 5.615 18 C -0.404 4.404 19 H 0.093 0.907 20 H 0.108 0.892 21 H 0.070 0.930 22 H 0.161 0.839 23 H 0.160 0.840 24 H 0.130 0.870 25 H 0.116 0.884 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.873 1.543 0.032 4.169 hybrid contribution 1.909 -0.133 -0.001 1.914 sum -1.964 1.410 0.031 2.418 Atomic orbital electron populations 1.20783 0.90195 1.02795 1.02594 1.19572 0.96332 0.90874 0.97715 1.20872 0.94250 0.96722 1.09339 1.20718 0.94587 0.97448 0.99229 1.20801 0.99016 0.91477 1.08470 1.18355 0.92738 0.94052 0.96735 1.19757 0.97760 0.90996 1.34088 1.21835 0.95331 0.97351 0.95113 1.19636 0.96318 0.89297 1.39870 0.88229 1.27304 0.93500 1.08326 0.90998 1.68677 1.01756 1.40079 1.32065 0.84723 0.79465 0.72106 0.80507 1.17919 1.18056 1.17912 1.84360 1.06915 0.90809 1.79396 1.23840 0.97554 1.01292 1.17683 0.90657 0.89163 0.93011 0.83924 0.84013 0.87014 0.88362 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.60 9.87 71.24 0.70 -2.89 15 2 C -0.04 -1.71 5.90 -19.66 -0.12 -1.82 15 3 C -0.19 -7.09 9.68 22.31 0.22 -6.88 15 4 C -0.10 -3.75 9.94 21.90 0.22 -3.53 15 5 C -0.18 -7.91 10.04 22.64 0.23 -7.68 15 6 C -0.01 -0.59 5.86 -21.48 -0.13 -0.71 15 7 C -0.40 -22.27 10.14 22.34 0.23 -22.04 15 8 C 0.02 1.28 6.11 22.37 0.14 1.41 15 9 C -0.42 -21.85 9.27 23.15 0.21 -21.63 15 10 H 0.10 4.94 7.85 -2.91 -0.02 4.91 15 11 C 0.02 0.82 5.50 85.33 0.47 1.28 15 12 N -0.80 -38.14 10.58 21.87 0.23 -37.91 15 13 Si 1.01 34.41 29.56 68.60 2.03 36.44 15 14 H -0.26 -8.45 7.11 99.48 0.71 -7.74 15 15 H -0.26 -8.00 7.11 99.48 0.71 -7.30 15 16 H -0.26 -8.44 7.11 99.48 0.71 -7.74 15 17 S 0.13 6.53 19.41 -56.49 -1.10 5.43 15 18 C -0.29 -14.57 6.30 23.12 0.15 -14.42 15 19 H 0.07 2.34 8.14 -2.39 -0.02 2.32 15 20 H 0.09 2.42 8.08 -2.39 -0.02 2.40 15 21 H 0.05 1.84 7.58 -2.39 -0.02 1.82 15 22 H 0.14 4.11 8.06 -2.91 -0.02 4.08 15 23 H 0.14 4.11 8.06 -2.91 -0.02 4.09 15 24 H 0.11 4.52 8.06 -2.91 -0.02 4.50 15 25 H 0.10 5.30 8.06 -2.91 -0.02 5.27 15 26 H 0.31 13.09 8.30 -92.70 -0.77 12.32 15 Total: -1.00 -60.67 241.66 4.66 -56.02 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.18 Total: 18.94 kcal Atomic # 6 Polarization: -81.24 SS G_CDS: 2.32 Total: -78.92 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.23 Total: -37.91 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -1.10 Total: 5.43 kcal Total: -60.67 4.66 -56.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214497229.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.464 kcal (2) G-P(sol) polarization free energy of solvation -60.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds