Wall clock time and date at job start Mon Mar 30 2020 02:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38973 * 119.88207 * 2 1 4 4 C 1.35921 * 120.65191 * 180.27518 * 3 2 1 5 5 C 1.41932 * 120.47425 * 359.45291 * 4 3 2 6 6 C 1.39796 * 128.54194 * 180.23373 * 5 4 3 7 7 C 1.36943 * 115.02840 * 180.26517 * 6 5 4 8 8 C 1.39918 * 124.82610 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00568 * 353.28343 * 8 7 6 10 10 C 1.40190 * 120.00083 * 173.28622 * 8 7 6 11 11 N 1.30760 * 119.99772 * 6.60265 * 10 8 7 12 12 Si 1.86792 * 120.00219 * 186.60925 * 10 8 7 13 13 H 1.48501 * 109.47768 * 94.98373 * 12 10 8 14 14 H 1.48507 * 109.47137 * 214.98514 * 12 10 8 15 15 H 1.48505 * 109.47164 * 334.98085 * 12 10 8 16 16 S 1.75460 * 110.34250 * 0.02562 * 7 6 5 17 17 C 1.40339 * 118.57867 * 0.51311 * 5 4 3 18 18 C 1.37657 * 119.88302 * 179.97438 * 2 1 3 19 19 H 1.09003 * 109.47001 * 89.99722 * 1 2 3 20 20 H 1.08997 * 109.47284 * 210.00208 * 1 2 3 21 21 H 1.08998 * 109.46975 * 330.00507 * 1 2 3 22 22 H 1.07996 * 119.67514 * 0.02562 * 3 2 1 23 23 H 1.07998 * 119.75668 * 179.72306 * 4 3 2 24 24 H 1.08001 * 122.48321 * 0.24907 * 6 5 4 25 25 H 0.97001 * 119.99853 * 180.02562 * 11 10 8 26 26 H 1.08010 * 119.85756 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.2050 0.0000 4 6 3.5585 1.2232 -0.0056 5 6 4.2947 0.0098 0.0001 6 6 5.6814 -0.1677 0.0002 7 6 6.0984 -1.4721 0.0008 8 6 7.4358 -1.8834 0.0016 9 1 8.2251 -1.1544 -0.1077 10 6 7.7513 -3.2418 0.1441 11 7 6.7987 -4.1375 0.1466 12 14 9.5326 -3.7724 0.3306 13 1 9.8600 -3.9093 1.7726 14 1 9.7341 -5.0775 -0.3488 15 1 10.4199 -2.7524 -0.2838 16 16 4.7172 -2.5541 0.0005 17 6 3.5893 -1.2034 0.0006 18 6 2.1929 -1.1935 0.0005 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3633 0.8900 0.5137 22 1 1.6522 2.1360 0.0004 23 1 4.0818 2.1679 -0.0101 24 1 6.3724 0.6623 -0.0004 25 1 7.0169 -5.0774 0.2455 26 1 1.6486 -2.1265 0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214497308.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:27 Heat of formation + Delta-G solvation = -9.589862 kcal Electronic energy + Delta-G solvation = -11684.758708 eV Core-core repulsion = 9624.365255 eV Total energy + Delta-G solvation = -2060.393453 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.96560 -36.89096 -35.25974 -32.11997 -31.33366 -28.89709 -25.83340 -23.85630 -22.59330 -20.86508 -19.68839 -17.47947 -17.08161 -16.26687 -15.69373 -15.15558 -14.61614 -14.52437 -14.34542 -13.73155 -13.47580 -13.15215 -13.03799 -12.89017 -12.72651 -12.02610 -11.89220 -11.79299 -11.57250 -10.97119 -10.91212 -10.20269 -9.07970 -8.92162 -8.26016 -6.55208 0.32257 0.73241 1.31018 1.34410 1.42574 1.53252 1.84675 1.89697 2.13397 2.84310 3.27442 4.14541 4.23640 4.47830 4.61215 4.84254 4.89100 4.90890 4.97337 5.15421 5.17681 5.44375 5.52613 5.55337 5.78537 5.90605 5.95897 6.08741 6.36050 6.52324 6.56396 7.95306 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.070010 B = 0.007879 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.848137 B = 3552.723428 C = 3933.429149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.159 4.159 3 C -0.102 4.102 4 C -0.164 4.164 5 C -0.017 4.017 6 C -0.398 4.398 7 C 0.027 3.973 8 C -0.419 4.419 9 H 0.101 0.899 10 C 0.017 3.983 11 N -0.800 5.800 12 Si 1.015 2.985 13 H -0.257 1.257 14 H -0.257 1.257 15 H -0.253 1.253 16 S 0.112 5.888 17 C -0.284 4.284 18 C -0.071 4.071 19 H 0.070 0.930 20 H 0.064 0.936 21 H 0.076 0.924 22 H 0.142 0.858 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.312 0.688 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 0.894 0.271 3.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.161 4.161 3 C -0.122 4.122 4 C -0.183 4.183 5 C -0.024 4.024 6 C -0.423 4.423 7 C -0.092 4.092 8 C -0.453 4.453 9 H 0.119 0.881 10 C -0.201 4.201 11 N -0.426 5.426 12 Si 0.833 3.167 13 H -0.182 1.182 14 H -0.181 1.181 15 H -0.177 1.177 16 S 0.372 5.628 17 C -0.398 4.398 18 C -0.093 4.093 19 H 0.089 0.911 20 H 0.083 0.917 21 H 0.095 0.905 22 H 0.160 0.840 23 H 0.134 0.866 24 H 0.119 0.881 25 H 0.126 0.874 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.749 -0.890 0.276 3.863 hybrid contribution 1.065 1.346 0.054 1.717 sum -2.684 0.456 0.331 2.743 Atomic orbital electron populations 1.20596 0.88819 1.02949 1.02328 1.19888 0.97222 0.92079 1.06936 1.20621 0.93208 0.98151 1.00210 1.20837 0.94822 0.95640 1.07037 1.18340 0.93005 0.93666 0.97400 1.19771 0.93556 0.95202 1.33731 1.21761 0.97416 0.94713 0.95284 1.19667 0.91677 0.94515 1.39411 0.88106 1.27320 1.06348 0.95302 0.91171 1.68730 1.36922 1.04882 1.32083 0.84662 0.73354 0.78829 0.79902 1.18176 1.18119 1.17660 1.84457 0.93852 1.04963 1.79577 1.23902 0.99144 1.00089 1.16673 1.20396 0.90498 0.98190 1.00241 0.91123 0.91683 0.90524 0.84033 0.86615 0.88084 0.87442 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.35 10.01 71.24 0.71 -1.64 15 2 C -0.16 -5.87 5.88 -19.82 -0.12 -5.99 15 3 C -0.10 -3.80 9.60 21.91 0.21 -3.59 15 4 C -0.16 -7.18 10.04 22.65 0.23 -6.95 15 5 C -0.02 -0.86 5.86 -21.48 -0.13 -0.99 15 6 C -0.40 -21.92 10.14 22.34 0.23 -21.69 15 7 C 0.03 1.53 6.11 22.37 0.14 1.66 15 8 C -0.42 -21.92 9.26 23.15 0.21 -21.71 15 9 H 0.10 5.00 7.86 -2.91 -0.02 4.98 15 10 C 0.02 0.81 5.49 85.33 0.47 1.28 15 11 N -0.80 -38.44 10.63 21.87 0.23 -38.21 15 12 Si 1.01 34.56 29.57 68.60 2.03 36.59 15 13 H -0.26 -8.47 7.11 99.48 0.71 -7.77 15 14 H -0.26 -8.14 7.11 99.48 0.71 -7.43 15 15 H -0.25 -8.42 7.11 99.48 0.71 -7.71 15 16 S 0.11 5.88 20.16 -56.49 -1.14 4.74 15 17 C -0.28 -14.40 6.48 23.12 0.15 -14.25 15 18 C -0.07 -3.06 9.71 22.47 0.22 -2.84 15 19 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 20 H 0.06 1.57 8.08 -2.39 -0.02 1.55 15 21 H 0.08 1.68 8.08 -2.39 -0.02 1.66 15 22 H 0.14 4.09 8.06 -2.91 -0.02 4.07 15 23 H 0.12 4.57 8.06 -2.91 -0.02 4.55 15 24 H 0.10 5.38 8.06 -2.91 -0.02 5.36 15 25 H 0.31 13.14 8.29 -92.71 -0.77 12.37 15 26 H 0.12 4.52 8.06 -2.91 -0.02 4.50 15 Total: -1.00 -60.46 242.93 4.62 -55.84 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 1.18 Total: 17.75 kcal Atomic # 6 Polarization: -79.03 SS G_CDS: 2.32 Total: -76.70 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.23 Total: -38.21 kcal Atomic # 14 Polarization: 34.56 SS G_CDS: 2.03 Total: 36.59 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.14 Total: 4.74 kcal Total: -60.46 4.62 -55.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214497308.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.246 kcal (2) G-P(sol) polarization free energy of solvation -60.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds