Wall clock time and date at job start Mon Mar 30 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86791 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47421 * 359.97438 * 3 2 1 5 5 H 1.48510 * 109.47424 * 119.99800 * 3 2 1 6 6 H 1.48501 * 109.47240 * 239.99408 * 3 2 1 7 7 C 1.39932 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00180 * 154.66937 * 7 2 1 9 9 C 1.41348 * 120.00001 * 334.66497 * 7 2 1 10 10 C 1.40730 * 120.23226 * 334.38336 * 9 7 2 11 11 C 1.37772 * 119.78375 * 179.72034 * 10 9 7 12 12 F 1.35107 * 119.86839 * 180.27382 * 11 10 9 13 13 C 1.38902 * 120.25944 * 0.54654 * 11 10 9 14 14 C 1.38704 * 120.46924 * 359.72648 * 13 11 10 15 15 F 1.35101 * 119.89633 * 180.02562 * 14 13 11 16 16 C 1.38044 * 120.20916 * 359.97438 * 14 13 11 17 17 Cl 1.73598 * 120.13045 * 179.97438 * 16 14 13 18 18 H 0.97003 * 119.99928 * 174.19470 * 1 2 3 19 19 H 1.08001 * 120.10417 * 359.97438 * 10 9 7 20 20 H 1.08001 * 119.76319 * 179.74134 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2774 2.7464 -0.0006 5 1 3.0961 1.6964 1.2126 6 1 3.0962 1.6963 -1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0101 -1.2570 -0.3996 9 6 1.4033 -2.3769 0.5249 10 6 0.3911 -2.2735 1.4971 11 6 -0.1962 -3.4149 1.9977 12 9 -1.1719 -3.3175 2.9270 13 6 0.2150 -4.6656 1.5547 14 6 1.2156 -4.7800 0.6010 15 9 1.6061 -6.0022 0.1781 16 6 1.8129 -3.6489 0.0819 17 17 3.0656 -3.7946 -1.1112 18 1 -0.4850 -0.8358 -0.0850 19 1 0.0728 -1.3025 1.8467 20 1 -0.2479 -5.5552 1.9556 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214504162.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:47 Heat of formation + Delta-G solvation = -100.815721 kcal Electronic energy + Delta-G solvation = -12252.614876 eV Core-core repulsion = 9496.159242 eV Total energy + Delta-G solvation = -2756.455634 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 218.000 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -48.14476 -48.09027 -37.73036 -35.29337 -34.10580 -29.80862 -28.81843 -25.70097 -21.70816 -21.53277 -18.61104 -16.48078 -16.25444 -15.58126 -15.09514 -14.79180 -14.46774 -14.29157 -13.66712 -13.16859 -12.81187 -11.95980 -11.49565 -11.32586 -11.22655 -10.89929 -10.56494 -10.30986 -10.14350 -9.62453 -9.30679 -8.05045 -7.76561 -7.46041 -4.93198 2.08640 2.21819 3.01220 3.06157 3.22484 3.31407 3.78041 4.06605 4.88231 4.89966 5.48004 5.85448 6.10208 6.35818 6.77725 6.94769 7.07550 7.14134 7.38934 7.62244 7.77380 8.14869 8.36472 9.64754 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.027394 B = 0.013630 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.866337 B = 2053.845986 C = 2970.769347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.036 3.964 3 Si 1.069 2.931 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.473 4.473 8 H 0.096 0.904 9 C 0.127 3.873 10 C -0.256 4.256 11 C 0.158 3.842 12 F -0.153 7.153 13 C -0.327 4.327 14 C 0.172 3.828 15 F -0.146 7.146 16 C -0.189 4.189 17 Cl -0.090 7.090 18 H 0.304 0.696 19 H 0.129 0.871 20 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 -0.795 0.321 2.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.189 4.189 3 Si 0.891 3.109 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.498 4.498 8 H 0.114 0.886 9 C 0.123 3.877 10 C -0.277 4.277 11 C 0.138 3.862 12 F -0.132 7.132 13 C -0.348 4.348 14 C 0.151 3.849 15 F -0.125 7.125 16 C -0.217 4.217 17 Cl -0.062 7.062 18 H 0.118 0.882 19 H 0.146 0.854 20 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.840 0.793 0.281 2.023 hybrid contribution 0.083 -2.074 -0.023 2.076 sum 1.923 -1.281 0.258 2.325 Atomic orbital electron populations 1.70476 1.08290 1.34926 1.25094 1.27333 0.95567 1.04887 0.91147 0.83565 0.75733 0.73071 0.78578 1.19441 1.19457 1.19549 1.20835 1.03363 0.93032 1.32602 0.88564 1.16952 0.90096 0.90805 0.89874 1.21053 1.05577 0.96937 1.04115 1.17134 0.87065 0.93847 0.88159 1.91393 1.60725 1.97187 1.63905 1.19945 1.08296 0.96713 1.09876 1.16784 0.94977 0.78210 0.94880 1.91407 1.90080 1.42066 1.88938 1.20652 1.03489 0.93543 1.04063 1.98224 1.52806 1.98083 1.57088 0.88170 0.85357 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.60 12.32 55.55 0.68 -17.92 14 2 C 0.04 0.82 4.94 -17.34 -0.09 0.74 14 3 Si 1.07 19.52 30.00 -169.99 -5.10 14.42 14 4 H -0.27 -4.92 7.11 56.52 0.40 -4.52 14 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 14 6 H -0.27 -4.70 7.11 56.52 0.40 -4.30 14 7 C -0.47 -11.41 8.45 -37.77 -0.32 -11.73 14 8 H 0.10 2.27 7.18 -52.49 -0.38 1.90 14 9 C 0.13 3.14 5.30 -106.81 -0.57 2.57 14 10 C -0.26 -6.17 7.92 -38.81 -0.31 -6.48 14 11 C 0.16 3.60 7.28 -39.51 -0.29 3.31 14 12 F -0.15 -3.32 17.26 2.25 0.04 -3.28 14 13 C -0.33 -7.23 10.01 -39.16 -0.39 -7.62 14 14 C 0.17 3.92 7.26 -39.48 -0.29 3.64 14 15 F -0.15 -3.16 16.82 2.25 0.04 -3.13 14 16 C -0.19 -4.50 6.38 -38.69 -0.25 -4.74 14 17 Cl -0.09 -1.96 27.24 -51.86 -1.41 -3.37 14 18 H 0.30 7.60 6.69 -40.82 -0.27 7.32 14 19 H 0.13 3.13 6.50 -52.49 -0.34 2.79 14 20 H 0.12 2.42 8.06 -52.49 -0.42 2.00 14 LS Contribution 210.92 15.07 3.18 3.18 Total: -1.00 -24.30 210.92 -5.27 -29.57 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -0.21 Total: 0.84 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -2.49 Total: -20.32 kcal Atomic # 7 Polarization: -18.60 SS G_CDS: 0.68 Total: -17.92 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.08 Total: -6.41 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.10 Total: 14.42 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -1.41 Total: -3.37 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -24.30 -5.27 -29.57 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214504162.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.243 kcal (2) G-P(sol) polarization free energy of solvation -24.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds