Wall clock time and date at job start Mon Mar 30 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86791 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47421 * 359.97438 * 3 2 1 5 5 H 1.48510 * 109.47424 * 119.99800 * 3 2 1 6 6 H 1.48501 * 109.47240 * 239.99408 * 3 2 1 7 7 C 1.39932 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00180 * 154.66937 * 7 2 1 9 9 C 1.41348 * 120.00001 * 334.66497 * 7 2 1 10 10 C 1.40730 * 120.23226 * 334.38336 * 9 7 2 11 11 C 1.37772 * 119.78375 * 179.72034 * 10 9 7 12 12 F 1.35107 * 119.86839 * 180.27382 * 11 10 9 13 13 C 1.38902 * 120.25944 * 0.54654 * 11 10 9 14 14 C 1.38704 * 120.46924 * 359.72648 * 13 11 10 15 15 F 1.35101 * 119.89633 * 180.02562 * 14 13 11 16 16 C 1.38044 * 120.20916 * 359.97438 * 14 13 11 17 17 Cl 1.73598 * 120.13045 * 179.97438 * 16 14 13 18 18 H 0.97003 * 119.99928 * 174.19470 * 1 2 3 19 19 H 1.08001 * 120.10417 * 359.97438 * 10 9 7 20 20 H 1.08001 * 119.76319 * 179.74134 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2774 2.7464 -0.0006 5 1 3.0961 1.6964 1.2126 6 1 3.0962 1.6963 -1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0101 -1.2570 -0.3996 9 6 1.4033 -2.3769 0.5249 10 6 0.3911 -2.2735 1.4971 11 6 -0.1962 -3.4149 1.9977 12 9 -1.1719 -3.3175 2.9270 13 6 0.2150 -4.6656 1.5547 14 6 1.2156 -4.7800 0.6010 15 9 1.6061 -6.0022 0.1781 16 6 1.8129 -3.6489 0.0819 17 17 3.0656 -3.7946 -1.1112 18 1 -0.4850 -0.8358 -0.0850 19 1 0.0728 -1.3025 1.8467 20 1 -0.2479 -5.5552 1.9556 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214504162.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:47 Heat of formation + Delta-G solvation = -111.850764 kcal Electronic energy + Delta-G solvation = -12253.093391 eV Core-core repulsion = 9496.159242 eV Total energy + Delta-G solvation = -2756.934149 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 218.000 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -49.91453 -49.87352 -39.54772 -37.06931 -35.89422 -31.62630 -30.64608 -27.52293 -23.51765 -23.35298 -20.39705 -18.27461 -18.06345 -17.38076 -16.88072 -16.58561 -16.24101 -15.84724 -15.40617 -14.96349 -14.54605 -13.75811 -13.24964 -13.04551 -12.94233 -12.57844 -12.07260 -11.98152 -11.85099 -11.36104 -11.02536 -9.88101 -9.59203 -9.28165 -6.79135 0.23702 0.41391 1.50350 1.53964 1.58743 1.83241 2.26477 2.33610 3.05711 3.08538 3.65648 4.10369 4.24228 4.54227 4.95748 5.12209 5.22837 5.30338 5.52591 5.78633 5.93847 6.30057 6.55547 7.80528 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.027394 B = 0.013630 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.866337 B = 2053.845986 C = 2970.769347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.008 3.992 3 Si 1.116 2.884 4 H -0.270 1.270 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.109 3.891 10 C -0.269 4.269 11 C 0.157 3.843 12 F -0.146 7.146 13 C -0.320 4.320 14 C 0.169 3.831 15 F -0.138 7.138 16 C -0.205 4.205 17 Cl -0.076 7.076 18 H 0.291 0.709 19 H 0.119 0.881 20 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -0.728 0.380 2.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.213 4.213 3 Si 0.931 3.069 4 H -0.194 1.194 5 H -0.183 1.183 6 H -0.178 1.178 7 C -0.517 4.517 8 H 0.116 0.884 9 C 0.105 3.895 10 C -0.289 4.289 11 C 0.138 3.862 12 F -0.125 7.125 13 C -0.341 4.341 14 C 0.149 3.851 15 F -0.117 7.117 16 C -0.234 4.234 17 Cl -0.048 7.048 18 H 0.104 0.896 19 H 0.137 0.863 20 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.335 0.829 0.340 2.502 hybrid contribution -0.087 -2.201 -0.039 2.203 sum 2.248 -1.372 0.301 2.651 Atomic orbital electron populations 1.70581 1.09024 1.34037 1.26845 1.28644 0.95485 1.07634 0.89507 0.83009 0.74900 0.69312 0.79632 1.19401 1.18291 1.17822 1.21025 1.03583 0.93694 1.33438 0.88449 1.17203 0.90511 0.91525 0.90273 1.21026 1.06205 0.97017 1.04649 1.17165 0.87043 0.93873 0.88154 1.91407 1.60357 1.97179 1.63557 1.20192 1.07587 0.97265 1.09028 1.16851 0.95026 0.78325 0.94947 1.91424 1.89996 1.41436 1.88842 1.20840 1.04206 0.93686 1.04668 1.98217 1.52083 1.98026 1.56447 0.89633 0.86331 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.14 12.32 21.82 0.27 -37.87 14 2 C 0.01 0.35 4.94 85.25 0.42 0.77 14 3 Si 1.12 38.07 30.00 68.60 2.06 40.13 14 4 H -0.27 -9.13 7.11 99.48 0.71 -8.42 14 5 H -0.26 -8.33 7.11 99.48 0.71 -7.63 14 6 H -0.25 -7.98 7.11 99.48 0.71 -7.27 14 7 C -0.49 -23.59 8.45 23.45 0.20 -23.39 14 8 H 0.10 4.54 7.18 -2.91 -0.02 4.52 14 9 C 0.11 5.37 5.30 -21.28 -0.11 5.26 14 10 C -0.27 -12.90 7.92 22.77 0.18 -12.72 14 11 C 0.16 7.02 7.28 22.32 0.16 7.18 14 12 F -0.15 -6.14 17.26 44.97 0.78 -5.37 14 13 C -0.32 -13.53 10.01 22.54 0.23 -13.30 14 14 C 0.17 7.45 7.26 22.33 0.16 7.61 14 15 F -0.14 -5.71 16.82 44.97 0.76 -4.95 14 16 C -0.21 -9.60 6.38 22.85 0.15 -9.45 14 17 Cl -0.08 -3.21 27.24 -2.72 -0.07 -3.29 14 18 H 0.29 14.76 6.69 -92.71 -0.62 14.14 14 19 H 0.12 5.86 6.50 -2.91 -0.02 5.84 14 20 H 0.15 5.41 8.06 -2.91 -0.02 5.39 14 Total: -1.00 -49.43 210.92 6.61 -42.83 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.44 Total: 6.57 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 1.38 Total: -38.04 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.27 Total: -37.87 kcal Atomic # 9 Polarization: -11.85 SS G_CDS: 1.53 Total: -10.32 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.06 Total: 40.13 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.07 Total: -3.29 kcal Total: -49.43 6.61 -42.83 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214504162.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.024 kcal (2) G-P(sol) polarization free energy of solvation -49.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds