Wall clock time and date at job start Mon Mar 30 2020 02:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48500 * 109.47235 * 85.18147 * 3 2 1 5 5 H 1.48495 * 109.46874 * 205.18400 * 3 2 1 6 6 H 1.48498 * 109.46899 * 325.18333 * 3 2 1 7 7 C 1.39934 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99637 * 197.34749 * 7 2 1 9 9 C 1.41300 * 120.00090 * 17.34781 * 7 2 1 10 10 C 1.40756 * 120.24302 * 25.02289 * 9 7 2 11 11 C 1.37634 * 119.79944 * 179.72140 * 10 9 7 12 12 Cl 1.73605 * 119.83919 * 180.30098 * 11 10 9 13 13 C 1.38836 * 120.32080 * 0.57813 * 11 10 9 14 14 C 1.38636 * 120.50241 * 359.70139 * 13 11 10 15 15 F 1.35095 * 119.91081 * 180.02562 * 14 13 11 16 16 C 1.38203 * 120.18270 * 359.97438 * 14 13 11 17 17 F 1.35102 * 120.15809 * 180.02562 * 16 14 13 18 18 H 0.96993 * 120.00017 * 0.02562 * 1 2 3 19 19 H 1.07995 * 120.09813 * 0.02562 * 10 9 7 20 20 H 1.08000 * 119.75585 * 179.71339 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3882 2.1052 1.3951 5 1 3.5872 1.4128 -0.5958 6 1 1.4946 2.6211 -0.7994 7 6 2.0082 -1.2119 0.0005 8 1 3.0513 -1.2330 0.2794 9 6 1.3499 -2.4079 -0.3638 10 6 0.2199 -2.3681 -1.2021 11 6 -0.4109 -3.5391 -1.5559 12 17 -1.8000 -3.4919 -2.5961 13 6 0.0548 -4.7575 -1.0803 14 6 1.1632 -4.8112 -0.2492 15 9 1.6065 -6.0033 0.2063 16 6 1.8165 -3.6487 0.1139 17 9 2.8968 -3.7017 0.9234 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1481 -1.4220 -1.5705 20 1 -0.4499 -5.6704 -1.3599 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214504555.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:50 Heat of formation + Delta-G solvation = -107.326356 kcal Electronic energy + Delta-G solvation = -12223.662326 eV Core-core repulsion = 9466.924370 eV Total energy + Delta-G solvation = -2756.737956 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 218.000 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -50.12409 -49.10856 -39.38046 -37.25907 -35.68762 -31.86948 -30.56018 -27.63841 -23.57605 -23.09183 -19.82242 -18.25984 -17.97590 -17.58017 -16.96748 -16.65368 -15.81695 -15.63518 -15.18089 -14.78483 -14.07658 -13.89354 -13.58707 -13.29988 -12.91999 -12.47517 -12.23175 -11.98230 -11.77209 -11.66823 -11.14326 -9.72061 -9.31240 -8.88321 -6.66197 0.34426 0.48732 1.26378 1.39195 1.44690 1.55814 2.14700 2.37123 3.16387 3.37299 3.77968 4.31878 4.48996 4.63248 4.93526 5.09891 5.24013 5.50726 5.69584 5.83585 6.23532 6.50169 6.55639 8.07191 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.012900 C = 0.008839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.563986 B = 2169.960100 C = 3166.857668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.041 3.959 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.464 4.464 8 H 0.086 0.914 9 C 0.087 3.913 10 C -0.157 4.157 11 C 0.013 3.987 12 Cl -0.072 7.072 13 C -0.250 4.250 14 C 0.104 3.896 15 F -0.146 7.146 16 C -0.094 4.094 17 F -0.157 7.157 18 H 0.302 0.698 19 H 0.136 0.864 20 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 0.492 -2.801 3.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.179 4.179 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.181 1.181 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.104 0.896 9 C 0.083 3.917 10 C -0.177 4.177 11 C -0.015 4.015 12 Cl -0.043 7.043 13 C -0.271 4.271 14 C 0.084 3.916 15 F -0.125 7.125 16 C -0.115 4.115 17 F -0.136 7.136 18 H 0.114 0.886 19 H 0.154 0.846 20 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.508 0.595 -2.832 3.263 hybrid contribution 0.424 0.179 0.333 0.568 sum -1.084 0.774 -2.499 2.832 Atomic orbital electron populations 1.69784 1.09022 1.32232 1.30700 1.26870 0.95640 1.04752 0.90636 0.85026 0.79204 0.74899 0.79795 1.18516 1.18105 1.17995 1.19847 0.98618 0.91584 1.39001 0.89600 1.17612 0.92350 0.91069 0.90680 1.21115 0.98562 0.97002 1.01030 1.20386 0.90782 0.94063 0.96219 1.98283 1.41339 1.98902 1.65767 1.20164 1.00819 0.98085 1.08011 1.17294 0.96374 0.78697 0.99242 1.91385 1.89093 1.44164 1.87829 1.18007 0.93845 0.94356 1.05327 1.91268 1.53316 1.97200 1.71843 0.88602 0.84604 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.92 10.96 21.83 0.24 -36.68 14 2 C 0.04 1.85 5.15 85.25 0.44 2.29 14 3 Si 0.99 34.21 29.59 68.60 2.03 36.24 14 4 H -0.26 -8.75 7.11 99.48 0.71 -8.04 14 5 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14 6 H -0.26 -8.19 7.11 99.48 0.71 -7.48 14 7 C -0.46 -23.46 8.78 23.43 0.21 -23.25 14 8 H 0.09 4.30 7.74 -2.91 -0.02 4.28 14 9 C 0.09 4.49 5.57 -21.26 -0.12 4.38 14 10 C -0.16 -7.55 8.46 22.74 0.19 -7.35 14 11 C 0.01 0.54 6.31 22.27 0.14 0.68 14 12 Cl -0.07 -2.57 28.94 -2.72 -0.08 -2.65 14 13 C -0.25 -10.58 9.80 22.51 0.22 -10.36 14 14 C 0.10 4.84 7.29 22.36 0.16 5.00 14 15 F -0.15 -6.42 17.17 44.97 0.77 -5.65 14 16 C -0.09 -4.80 7.31 22.92 0.17 -4.63 14 17 F -0.16 -8.07 16.63 44.97 0.75 -7.32 14 18 H 0.30 12.38 8.30 -92.71 -0.77 11.61 14 19 H 0.14 6.61 6.18 -2.91 -0.02 6.60 14 20 H 0.15 5.36 8.06 -2.91 -0.02 5.34 14 Total: -1.00 -51.58 213.57 6.41 -45.18 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.29 Total: 4.14 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 1.41 Total: -33.25 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.24 Total: -36.68 kcal Atomic # 9 Polarization: -14.49 SS G_CDS: 1.52 Total: -12.97 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 2.03 Total: 36.24 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.08 Total: -2.65 kcal Total: -51.58 6.41 -45.18 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214504555.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.150 kcal (2) G-P(sol) polarization free energy of solvation -51.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds