Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00226 * 2 1 4 4 H 1.48501 * 109.46722 * 269.99998 * 3 2 1 5 5 H 1.48502 * 109.46820 * 29.99458 * 3 2 1 6 6 H 1.48497 * 109.47237 * 149.99982 * 3 2 1 7 7 C 1.37877 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99639 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00278 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47220 * 180.02562 * 9 7 2 11 11 N 1.34096 * 126.04847 * 265.04292 * 10 9 7 12 12 H 0.97001 * 125.03700 * 359.93037 * 11 10 9 13 13 N 1.39960 * 109.92797 * 179.97438 * 11 10 9 14 14 C 1.32120 * 108.95659 * 0.05925 * 13 11 10 15 15 C 1.41164 * 134.59624 * 179.97438 * 14 13 11 16 16 C 1.35567 * 119.67946 * 179.97438 * 15 14 13 17 17 C 1.40078 * 121.77729 * 0.02562 * 16 15 14 18 18 O 1.35982 * 119.19825 * 180.02562 * 17 16 15 19 19 C 1.36065 * 121.60813 * 359.97438 * 17 16 15 20 20 C 1.38221 * 126.04523 * 84.99764 * 10 9 7 21 21 H 0.97006 * 119.99537 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46731 * 59.99912 * 9 7 2 23 23 H 1.08994 * 109.46960 * 300.00429 * 9 7 2 24 24 H 1.07999 * 120.15615 * 359.96495 * 15 14 13 25 25 H 1.08000 * 119.11266 * 179.97438 * 16 15 14 26 26 H 0.96695 * 113.99315 * 269.97390 * 18 17 16 27 27 H 1.08001 * 120.25535 * 179.72979 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0010 11 7 4.3648 -3.3279 1.0811 12 1 4.3353 -3.0049 1.9953 13 7 4.7809 -4.6069 0.6939 14 6 4.6966 -4.7059 -0.6209 15 6 4.9718 -5.7254 -1.5577 16 6 4.7702 -5.4956 -2.8785 17 6 4.2928 -4.2655 -3.3488 18 8 4.1092 -4.0923 -4.6850 19 6 4.0075 -3.2401 -2.5012 20 6 4.1935 -3.4139 -1.1124 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8752 -0.6804 -0.8888 24 1 5.3413 -6.6837 -1.2238 25 1 4.9841 -6.2819 -3.5873 26 1 4.8859 -3.7488 -5.1473 27 1 3.6446 -2.2993 -2.8880 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219672136.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = 38.657461 kcal Electronic energy + Delta-G solvation = -13860.135610 eV Core-core repulsion = 11391.374198 eV Total energy + Delta-G solvation = -2468.761412 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.81374 -38.22217 -35.14553 -33.62965 -31.82888 -30.19760 -29.41251 -26.88926 -23.84378 -22.74736 -21.28839 -19.47041 -17.93644 -17.11462 -17.04445 -15.82824 -15.00293 -14.55836 -14.39939 -13.97569 -13.55012 -13.15918 -12.73496 -12.31239 -11.99389 -11.76203 -11.18764 -10.88258 -10.71918 -10.36828 -10.28073 -9.75539 -9.70191 -9.38028 -8.79056 -8.34884 -6.97096 -6.26851 -4.30988 1.07221 2.14156 2.92157 3.14030 3.20311 3.22592 3.25570 4.13061 4.21937 4.58300 4.85046 5.03154 5.12920 5.52304 5.71887 5.76457 5.91127 6.06908 6.40866 6.56410 6.58019 6.85423 6.90978 6.99459 7.10087 7.33169 7.62154 8.02203 8.14581 8.23894 8.76300 9.28941 10.85237 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031371 B = 0.009012 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.317212 B = 3106.089322 C = 3642.462564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.077 0.923 9 C 0.035 3.965 10 C 0.191 3.809 11 N -0.430 5.430 12 H 0.440 0.560 13 N -0.334 5.334 14 C 0.103 3.897 15 C -0.107 4.107 16 C -0.089 4.089 17 C 0.025 3.975 18 O -0.499 6.499 19 C -0.027 4.027 20 C -0.216 4.216 21 H 0.268 0.732 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.374 0.626 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.763 -4.454 -3.661 12.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.096 0.904 9 C -0.004 4.004 10 C 0.051 3.949 11 N -0.129 5.129 12 H 0.285 0.715 13 N -0.161 5.161 14 C -0.051 4.051 15 C -0.128 4.128 16 C -0.112 4.112 17 C -0.020 4.020 18 O -0.307 6.307 19 C -0.048 4.048 20 C -0.225 4.225 21 H 0.078 0.922 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.228 0.772 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.355 -5.219 -2.398 11.841 hybrid contribution 0.424 1.636 -0.308 1.718 sum 10.780 -3.582 -2.706 11.677 Atomic orbital electron populations 1.69879 1.06280 1.27411 1.48914 1.24938 0.94772 0.98964 0.93963 0.86827 0.80244 0.83577 0.79023 1.19691 1.20892 1.18959 1.20737 0.87129 0.95248 1.53406 0.90440 1.18665 0.98234 0.84521 0.98988 1.21957 0.90682 0.96089 0.86162 1.46283 1.47499 1.09906 1.09221 0.71542 1.77545 1.29506 0.97132 1.11886 1.20923 0.98105 0.94820 0.91281 1.19592 1.05232 0.97281 0.90680 1.20771 0.98132 0.96886 0.95367 1.17576 1.07774 0.93628 0.83065 1.84943 1.40673 1.87536 1.17500 1.20575 0.94970 0.98492 0.90722 1.19038 1.14971 0.94810 0.93718 0.92153 0.94517 0.93349 0.85704 0.85755 0.77246 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.96 55.43 0.77 -25.13 15 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 15 3 Si 0.88 19.65 27.47 -169.99 -4.67 14.98 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.26 -5.55 6.54 56.52 0.37 -5.18 15 7 C -0.53 -13.97 9.65 -34.44 -0.33 -14.30 15 8 H 0.08 2.32 7.98 -52.49 -0.42 1.90 15 9 C 0.03 0.76 4.60 -29.04 -0.13 0.62 15 10 C 0.19 3.90 6.47 -81.61 -0.53 3.37 15 11 N -0.43 -7.98 7.19 33.86 0.24 -7.73 15 12 H 0.44 6.69 8.96 -182.70 -1.64 5.06 15 13 N -0.33 -6.52 12.70 33.26 0.42 -6.10 15 14 C 0.10 2.00 7.49 -83.04 -0.62 1.38 15 15 C -0.11 -1.72 10.08 -39.43 -0.40 -2.12 15 16 C -0.09 -1.33 9.81 -39.85 -0.39 -1.72 15 17 C 0.02 0.41 6.63 -39.67 -0.26 0.15 15 18 O -0.50 -7.29 13.45 -19.68 -0.26 -7.55 15 19 C -0.03 -0.50 9.99 -39.24 -0.39 -0.89 15 20 C -0.22 -4.38 6.26 -105.19 -0.66 -5.04 15 21 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 22 H 0.04 0.74 7.20 -51.93 -0.37 0.37 15 23 H 0.05 1.01 7.57 -51.93 -0.39 0.62 15 24 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15 25 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 26 H 0.37 3.48 9.06 45.56 0.41 3.89 15 27 H 0.13 2.41 8.06 -52.49 -0.42 1.99 15 LS Contribution 245.22 15.07 3.70 3.70 Total: -1.00 -31.58 245.22 -6.46 -38.04 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -2.85 Total: 6.37 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -3.81 Total: -16.57 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 1.44 Total: -38.97 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.26 Total: -7.55 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.67 Total: 14.98 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.58 -6.46 -38.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219672136.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.700 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds