Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00226 * 2 1 4 4 H 1.48501 * 109.46722 * 269.99998 * 3 2 1 5 5 H 1.48502 * 109.46820 * 29.99458 * 3 2 1 6 6 H 1.48497 * 109.47237 * 149.99982 * 3 2 1 7 7 C 1.37877 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99639 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00278 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47220 * 180.02562 * 9 7 2 11 11 N 1.34096 * 126.04847 * 265.04292 * 10 9 7 12 12 H 0.97001 * 125.03700 * 359.93037 * 11 10 9 13 13 N 1.39960 * 109.92797 * 179.97438 * 11 10 9 14 14 C 1.32120 * 108.95659 * 0.05925 * 13 11 10 15 15 C 1.41164 * 134.59624 * 179.97438 * 14 13 11 16 16 C 1.35567 * 119.67946 * 179.97438 * 15 14 13 17 17 C 1.40078 * 121.77729 * 0.02562 * 16 15 14 18 18 O 1.35982 * 119.19825 * 180.02562 * 17 16 15 19 19 C 1.36065 * 121.60813 * 359.97438 * 17 16 15 20 20 C 1.38221 * 126.04523 * 84.99764 * 10 9 7 21 21 H 0.97006 * 119.99537 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46731 * 59.99912 * 9 7 2 23 23 H 1.08994 * 109.46960 * 300.00429 * 9 7 2 24 24 H 1.07999 * 120.15615 * 359.96495 * 15 14 13 25 25 H 1.08000 * 119.11266 * 179.97438 * 16 15 14 26 26 H 0.96695 * 113.99315 * 269.97390 * 18 17 16 27 27 H 1.08001 * 120.25535 * 179.72979 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0010 11 7 4.3648 -3.3279 1.0811 12 1 4.3353 -3.0049 1.9953 13 7 4.7809 -4.6069 0.6939 14 6 4.6966 -4.7059 -0.6209 15 6 4.9718 -5.7254 -1.5577 16 6 4.7702 -5.4956 -2.8785 17 6 4.2928 -4.2655 -3.3488 18 8 4.1092 -4.0923 -4.6850 19 6 4.0075 -3.2401 -2.5012 20 6 4.1935 -3.4139 -1.1124 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8752 -0.6804 -0.8888 24 1 5.3413 -6.6837 -1.2238 25 1 4.9841 -6.2819 -3.5873 26 1 4.8859 -3.7488 -5.1473 27 1 3.6446 -2.2993 -2.8880 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219672136.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = 14.809332 kcal Electronic energy + Delta-G solvation = -13861.169742 eV Core-core repulsion = 11391.374198 eV Total energy + Delta-G solvation = -2469.795544 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.24993 -39.49895 -36.45053 -35.48375 -33.55402 -31.58843 -31.00082 -28.47210 -25.32083 -24.49941 -22.66882 -20.91670 -19.23299 -19.07343 -18.56248 -17.24744 -16.39119 -16.24052 -15.77237 -15.51293 -14.93716 -14.85027 -14.30042 -13.83031 -13.61564 -13.21302 -12.65373 -12.53604 -12.32841 -11.94081 -11.75835 -11.68416 -11.13815 -10.93712 -10.82852 -9.70832 -8.40601 -8.32888 -6.44220 -0.31757 0.79105 1.40180 1.40886 1.45260 1.51501 1.82578 2.32705 2.79133 3.00028 3.27176 3.58562 3.72260 4.18561 4.23439 4.42571 4.61427 4.74704 4.84751 4.98487 5.21560 5.38574 5.43752 5.55830 5.60664 5.83392 6.09904 6.26544 6.60839 6.63986 7.04987 7.19921 8.82196 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031371 B = 0.009012 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.317212 B = 3106.089322 C = 3642.462564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.235 1.235 7 C -0.530 4.530 8 H 0.023 0.977 9 C 0.044 3.956 10 C 0.162 3.838 11 N -0.423 5.423 12 H 0.451 0.549 13 N -0.342 5.342 14 C 0.083 3.917 15 C -0.105 4.105 16 C -0.083 4.083 17 C 0.049 3.951 18 O -0.506 6.506 19 C -0.069 4.069 20 C -0.231 4.231 21 H 0.271 0.729 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.155 0.845 25 H 0.165 0.835 26 H 0.403 0.597 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.982 -4.701 -4.590 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.158 1.158 7 C -0.568 4.568 8 H 0.042 0.958 9 C 0.005 3.995 10 C 0.023 3.977 11 N -0.124 5.124 12 H 0.298 0.702 13 N -0.170 5.170 14 C -0.070 4.070 15 C -0.126 4.126 16 C -0.105 4.105 17 C 0.004 3.996 18 O -0.318 6.318 19 C -0.090 4.090 20 C -0.240 4.240 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.173 0.827 25 H 0.183 0.817 26 H 0.260 0.740 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.613 -5.475 -3.332 14.148 hybrid contribution -0.287 1.530 -0.148 1.564 sum 12.326 -3.945 -3.480 13.402 Atomic orbital electron populations 1.70052 1.08601 1.28674 1.50981 1.25951 0.95557 1.03441 0.93283 0.85639 0.79725 0.77557 0.79671 1.18782 1.21039 1.15785 1.20884 0.89892 0.93229 1.52832 0.95830 1.18468 0.94727 0.86052 1.00232 1.21758 0.92894 0.96016 0.87065 1.46248 1.47116 1.09487 1.09525 0.70245 1.77452 1.29724 0.97430 1.12352 1.21446 0.98623 0.95472 0.91507 1.20034 1.04442 0.97631 0.90536 1.21140 0.96704 0.97006 0.95687 1.17755 1.04838 0.93414 0.83634 1.84856 1.42732 1.87736 1.16457 1.20649 0.98129 0.99466 0.90731 1.19352 1.14912 0.95392 0.94391 0.92036 0.92460 0.92209 0.82727 0.81736 0.73979 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.06 13.96 21.45 0.30 -56.76 15 2 C 0.02 0.89 5.47 84.65 0.46 1.35 15 3 Si 0.95 40.13 27.47 68.60 1.88 42.01 15 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 6 H -0.23 -8.70 6.54 99.48 0.65 -8.05 15 7 C -0.53 -29.02 9.65 25.60 0.25 -28.77 15 8 H 0.02 1.49 7.98 -2.91 -0.02 1.47 15 9 C 0.04 1.91 4.60 29.10 0.13 2.04 15 10 C 0.16 6.69 6.47 42.21 0.27 6.96 15 11 N -0.42 -15.66 7.19 -46.77 -0.34 -15.99 15 12 H 0.45 13.65 8.96 -213.41 -1.91 11.74 15 13 N -0.34 -13.15 12.70 -48.69 -0.62 -13.77 15 14 C 0.08 3.14 7.49 42.15 0.32 3.45 15 15 C -0.11 -3.12 10.08 22.37 0.23 -2.89 15 16 C -0.08 -2.20 9.81 22.10 0.22 -1.98 15 17 C 0.05 1.52 6.63 22.21 0.15 1.67 15 18 O -0.51 -13.33 13.45 -93.34 -1.26 -14.58 15 19 C -0.07 -2.57 9.99 22.49 0.22 -2.34 15 20 C -0.23 -9.39 6.26 -20.23 -0.13 -9.52 15 21 H 0.27 15.17 8.31 -92.70 -0.77 14.40 15 22 H 0.06 2.22 7.20 -2.39 -0.02 2.20 15 23 H 0.06 2.44 7.57 -2.39 -0.02 2.42 15 24 H 0.16 3.59 8.06 -2.91 -0.02 3.57 15 25 H 0.17 3.06 8.06 -2.91 -0.02 3.04 15 26 H 0.40 6.09 9.06 -74.06 -0.67 5.42 15 27 H 0.12 4.61 8.06 -2.91 -0.02 4.58 15 Total: -1.00 -70.26 245.22 0.67 -69.58 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -1.42 Total: 19.54 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 2.12 Total: -30.03 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -0.66 Total: -86.52 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -1.26 Total: -14.58 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.88 Total: 42.01 kcal Total: -70.26 0.67 -69.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219672136.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.390 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds