Wall clock time and date at job start Mon Mar 30 2020 02:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30578 * 1 3 3 Si 1.86801 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46955 * 240.00031 * 3 2 1 5 5 H 1.48507 * 109.47229 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47141 * 120.00067 * 3 2 1 7 7 C 1.40383 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99850 * 182.60777 * 7 2 1 9 9 C 1.40546 * 119.99771 * 2.60540 * 7 2 1 10 10 C 1.40915 * 120.63906 * 326.26324 * 9 7 2 11 11 C 1.36341 * 119.97558 * 179.97438 * 10 9 7 12 12 C 1.38863 * 121.40089 * 0.02562 * 11 10 9 13 13 C 1.37819 * 121.33591 * 359.69561 * 12 11 10 14 14 C 1.39874 * 119.89185 * 0.56358 * 13 12 11 15 15 C 1.46420 * 120.66534 * 179.74524 * 14 13 12 16 16 C 1.35477 * 120.00279 * 314.22301 * 15 14 13 17 17 C 1.41823 * 119.99573 * 350.13044 * 16 15 14 18 18 O 1.21643 * 120.00153 * 353.16211 * 17 16 15 19 19 O 1.34951 * 119.99761 * 173.16868 * 17 16 15 20 20 H 0.97000 * 120.00254 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.01046 * 359.95856 * 10 9 7 22 22 H 1.07999 * 119.29458 * 180.02562 * 11 10 9 23 23 H 1.07994 * 119.33146 * 179.97438 * 12 11 10 24 24 H 1.08003 * 120.05106 * 180.30675 * 13 12 11 25 25 H 1.08007 * 119.99586 * 134.22355 * 15 14 13 26 26 H 1.07991 * 120.00319 * 170.40150 * 16 15 14 27 27 H 0.96697 * 113.99931 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 3.0934 1.6964 -1.2125 5 1 1.2747 2.7465 0.0006 6 1 3.0935 1.6965 1.2125 7 6 2.0077 -1.2157 -0.0005 8 1 3.0868 -1.2162 0.0420 9 6 1.3061 -2.4322 -0.0564 10 6 0.0483 -2.5650 0.5650 11 6 -0.6208 -3.7512 0.5019 12 6 -0.0900 -4.8467 -0.1662 13 6 1.1328 -4.7773 -0.7981 14 6 1.8690 -3.5885 -0.7633 15 6 3.1724 -3.4976 -1.4241 16 6 4.0832 -4.4879 -1.2650 17 6 3.8641 -5.5044 -0.3006 18 8 2.9247 -5.4215 0.4678 19 8 4.6978 -6.5635 -0.2354 20 1 -0.4850 0.8400 0.0004 21 1 -0.3853 -1.7275 1.0913 22 1 -1.5843 -3.8407 0.9817 23 1 -0.6486 -5.7705 -0.1949 24 1 1.5238 -5.6407 -1.3159 25 1 3.4078 -2.6410 -2.0385 26 1 4.9780 -4.5008 -1.8693 27 1 4.4683 -7.2029 0.4529 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223081847.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:28 Heat of formation + Delta-G solvation = -49.651307 kcal Electronic energy + Delta-G solvation = -14098.060240 eV Core-core repulsion = 11593.176722 eV Total energy + Delta-G solvation = -2504.883518 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.60029 -37.32314 -35.36381 -33.76450 -32.85922 -29.67351 -28.66945 -25.46026 -23.89176 -21.01123 -20.63696 -18.42313 -17.50883 -17.26400 -15.93651 -15.26725 -14.84101 -14.29059 -13.67601 -13.55084 -12.80407 -12.66997 -12.42799 -11.72640 -11.52853 -11.24873 -11.21056 -10.80590 -10.62043 -10.52081 -9.88901 -9.75004 -9.35383 -9.30505 -8.80361 -7.25339 -7.00558 -6.75492 -4.51810 1.54333 2.76669 2.98726 3.01239 3.14536 3.34803 3.81898 3.92998 4.12210 4.59412 5.58443 5.86732 6.05069 6.20985 6.27318 6.39798 6.64124 6.88634 6.98728 7.05762 7.14858 7.20711 7.39616 7.55650 7.89847 8.00667 8.12293 8.16416 8.53731 8.70835 8.72495 8.90019 10.04593 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.010254 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.561643 B = 2729.933997 C = 3421.985176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.080 0.920 9 C 0.140 3.860 10 C -0.162 4.162 11 C -0.091 4.091 12 C -0.242 4.242 13 C -0.008 4.008 14 C -0.227 4.227 15 C 0.089 3.911 16 C -0.304 4.304 17 C 0.500 3.500 18 O -0.500 6.500 19 O -0.528 6.528 20 H 0.284 0.716 21 H 0.127 0.873 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 -2.752 -1.559 5.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.147 4.147 3 Si 0.743 3.257 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.098 0.902 9 C 0.138 3.862 10 C -0.181 4.181 11 C -0.110 4.110 12 C -0.261 4.261 13 C -0.026 4.026 14 C -0.228 4.228 15 C 0.071 3.929 16 C -0.323 4.323 17 C 0.348 3.652 18 O -0.390 6.390 19 O -0.339 6.339 20 H 0.095 0.905 21 H 0.145 0.855 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.142 0.858 26 H 0.139 0.861 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.715 -2.259 -1.665 4.656 hybrid contribution 0.250 0.239 0.383 0.516 sum 3.966 -2.020 -1.282 4.632 Atomic orbital electron populations 1.69657 1.07649 1.29594 1.34586 1.26070 0.94960 1.01571 0.92102 0.86187 0.79909 0.79498 0.80144 1.18713 1.20145 1.18730 1.19555 0.94929 0.90033 1.43107 0.90185 1.18610 0.91108 0.89714 0.86811 1.21248 0.97276 0.96620 1.02966 1.20469 0.97883 0.94070 0.98531 1.20152 0.98761 0.97938 1.09252 1.20378 0.93224 0.93630 0.95363 1.19741 0.96390 0.96475 1.10233 1.22399 0.90403 0.92116 0.88014 1.20903 1.04219 1.00225 1.06968 1.19951 0.79481 0.81095 0.84625 1.91088 1.29174 1.76514 1.42185 1.85093 1.56357 1.34468 1.57974 0.90486 0.85486 0.89621 0.89749 0.90170 0.85841 0.86103 0.75127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.57 10.61 55.57 0.59 -18.98 15 2 C 0.07 1.72 5.42 -17.28 -0.09 1.63 15 3 Si 0.92 17.89 29.56 -169.99 -5.03 12.86 15 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 15 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 7 C -0.45 -11.41 8.47 -37.91 -0.32 -11.73 15 8 H 0.08 1.96 7.56 -52.49 -0.40 1.56 15 9 C 0.14 3.71 5.72 -104.58 -0.60 3.12 15 10 C -0.16 -4.25 8.63 -39.25 -0.34 -4.59 15 11 C -0.09 -2.21 9.91 -40.03 -0.40 -2.61 15 12 C -0.24 -5.75 9.98 -39.50 -0.39 -6.14 15 13 C -0.01 -0.18 6.66 -39.12 -0.26 -0.44 15 14 C -0.23 -5.56 4.64 -102.56 -0.48 -6.04 15 15 C 0.09 1.86 8.90 -37.28 -0.33 1.53 15 16 C -0.30 -5.76 9.90 -39.20 -0.39 -6.15 15 17 C 0.50 9.89 7.22 32.10 0.23 10.13 15 18 O -0.50 -11.62 12.75 -19.37 -0.25 -11.87 15 19 O -0.53 -8.42 13.54 -41.18 -0.56 -8.98 15 20 H 0.28 6.39 8.29 -40.82 -0.34 6.05 15 21 H 0.13 3.39 6.15 -52.49 -0.32 3.07 15 22 H 0.09 1.85 8.06 -52.49 -0.42 1.43 15 23 H 0.08 1.80 8.06 -52.49 -0.42 1.38 15 24 H 0.08 1.80 7.18 -52.48 -0.38 1.42 15 25 H 0.12 2.31 8.06 -52.48 -0.42 1.88 15 26 H 0.12 1.93 8.06 -52.49 -0.42 1.51 15 27 H 0.39 4.60 8.98 45.56 0.41 5.01 15 LS Contribution 243.62 15.07 3.67 3.67 Total: -1.00 -29.01 243.62 -6.45 -35.46 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -1.51 Total: 9.13 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -3.37 Total: -21.30 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.59 Total: -18.98 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.80 Total: -20.85 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.01 -6.45 -35.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223081847.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.190 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds