Wall clock time and date at job start Mon Mar 30 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30578 * 1 3 3 Si 1.86801 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46955 * 240.00031 * 3 2 1 5 5 H 1.48507 * 109.47229 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47141 * 120.00067 * 3 2 1 7 7 C 1.40383 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99850 * 182.60777 * 7 2 1 9 9 C 1.40546 * 119.99771 * 2.60540 * 7 2 1 10 10 C 1.40915 * 120.63906 * 326.26324 * 9 7 2 11 11 C 1.36341 * 119.97558 * 179.97438 * 10 9 7 12 12 C 1.38863 * 121.40089 * 0.02562 * 11 10 9 13 13 C 1.37819 * 121.33591 * 359.69561 * 12 11 10 14 14 C 1.39874 * 119.89185 * 0.56358 * 13 12 11 15 15 C 1.46420 * 120.66534 * 179.74524 * 14 13 12 16 16 C 1.35477 * 120.00279 * 314.22301 * 15 14 13 17 17 C 1.41823 * 119.99573 * 350.13044 * 16 15 14 18 18 O 1.21643 * 120.00153 * 353.16211 * 17 16 15 19 19 O 1.34951 * 119.99761 * 173.16868 * 17 16 15 20 20 H 0.97000 * 120.00254 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.01046 * 359.95856 * 10 9 7 22 22 H 1.07999 * 119.29458 * 180.02562 * 11 10 9 23 23 H 1.07994 * 119.33146 * 179.97438 * 12 11 10 24 24 H 1.08003 * 120.05106 * 180.30675 * 13 12 11 25 25 H 1.08007 * 119.99586 * 134.22355 * 15 14 13 26 26 H 1.07991 * 120.00319 * 170.40150 * 16 15 14 27 27 H 0.96697 * 113.99931 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 3.0934 1.6964 -1.2125 5 1 1.2747 2.7465 0.0006 6 1 3.0935 1.6965 1.2125 7 6 2.0077 -1.2157 -0.0005 8 1 3.0868 -1.2162 0.0420 9 6 1.3061 -2.4322 -0.0564 10 6 0.0483 -2.5650 0.5650 11 6 -0.6208 -3.7512 0.5019 12 6 -0.0900 -4.8467 -0.1662 13 6 1.1328 -4.7773 -0.7981 14 6 1.8690 -3.5885 -0.7633 15 6 3.1724 -3.4976 -1.4241 16 6 4.0832 -4.4879 -1.2650 17 6 3.8641 -5.5044 -0.3006 18 8 2.9247 -5.4215 0.4678 19 8 4.6978 -6.5635 -0.2354 20 1 -0.4850 0.8400 0.0004 21 1 -0.3853 -1.7275 1.0913 22 1 -1.5843 -3.8407 0.9817 23 1 -0.6486 -5.7705 -0.1949 24 1 1.5238 -5.6407 -1.3159 25 1 3.4078 -2.6410 -2.0385 26 1 4.9780 -4.5008 -1.8693 27 1 4.4683 -7.2029 0.4529 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223081847.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:27 Heat of formation + Delta-G solvation = -66.989566 kcal Electronic energy + Delta-G solvation = -14098.812083 eV Core-core repulsion = 11593.176722 eV Total energy + Delta-G solvation = -2505.635362 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.18239 -39.09191 -36.88245 -35.56297 -34.54300 -31.52345 -30.45406 -27.27366 -25.55326 -22.81629 -22.40532 -20.02329 -19.25891 -18.87607 -17.61746 -16.94434 -16.42440 -15.97626 -15.41387 -15.23957 -14.45137 -14.38215 -14.07813 -13.49113 -13.23329 -12.93089 -12.82089 -12.48805 -12.23939 -12.13593 -11.62832 -11.56255 -11.09378 -11.06396 -10.47439 -9.14446 -8.80842 -8.53507 -6.40369 -0.08758 1.02660 1.40321 1.43254 1.52466 1.58947 2.20522 2.35791 2.71728 2.78850 3.70529 4.29607 4.35728 4.54303 4.58394 4.73603 4.88012 5.09250 5.31334 5.33133 5.43240 5.64987 5.70977 5.76775 6.05178 6.14696 6.22329 6.31133 6.66802 6.85545 7.03134 7.26001 8.30900 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.010254 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.561643 B = 2729.933997 C = 3421.985176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.253 1.253 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.478 4.478 8 H 0.082 0.918 9 C 0.105 3.895 10 C -0.192 4.192 11 C -0.100 4.100 12 C -0.253 4.253 13 C -0.015 4.015 14 C -0.233 4.233 15 C 0.066 3.934 16 C -0.276 4.276 17 C 0.501 3.499 18 O -0.538 6.538 19 O -0.512 6.512 20 H 0.290 0.710 21 H 0.111 0.889 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.094 0.906 25 H 0.143 0.857 26 H 0.161 0.839 27 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.915 -3.153 -2.360 7.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.506 4.506 8 H 0.100 0.900 9 C 0.103 3.897 10 C -0.211 4.211 11 C -0.118 4.118 12 C -0.272 4.272 13 C -0.033 4.033 14 C -0.234 4.234 15 C 0.048 3.952 16 C -0.294 4.294 17 C 0.350 3.650 18 O -0.431 6.431 19 O -0.324 6.324 20 H 0.101 0.899 21 H 0.129 0.871 22 H 0.123 0.877 23 H 0.125 0.875 24 H 0.112 0.888 25 H 0.161 0.839 26 H 0.178 0.822 27 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 5.567 -2.707 -2.467 6.663 hybrid contribution -0.205 0.122 0.622 0.666 sum 5.362 -2.584 -1.845 6.232 Atomic orbital electron populations 1.69735 1.09118 1.30762 1.35260 1.26948 0.95686 1.04664 0.91059 0.85116 0.78569 0.74976 0.80278 1.17709 1.19321 1.18585 1.19734 0.95080 0.90730 1.45103 0.90014 1.19015 0.91789 0.91146 0.87792 1.21244 0.98371 0.97024 1.04472 1.20704 0.98674 0.93757 0.98690 1.20467 0.99108 0.98595 1.09043 1.20590 0.93301 0.93970 0.95485 1.20138 0.97938 0.95947 1.09421 1.22526 0.89693 0.93867 0.89121 1.21320 1.04545 0.98149 1.05432 1.20163 0.79040 0.81755 0.84039 1.91097 1.30876 1.77545 1.43575 1.85034 1.54856 1.33874 1.58656 0.89907 0.87095 0.87694 0.87486 0.88802 0.83914 0.82165 0.72646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.95 10.61 21.90 0.23 -41.72 15 2 C 0.03 1.55 5.42 85.40 0.46 2.01 15 3 Si 0.99 36.53 29.56 68.60 2.03 38.55 15 4 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 15 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 7 C -0.48 -24.86 8.47 23.36 0.20 -24.66 15 8 H 0.08 4.04 7.56 -2.91 -0.02 4.02 15 9 C 0.11 5.71 5.72 -19.84 -0.11 5.60 15 10 C -0.19 -10.46 8.63 22.48 0.19 -10.27 15 11 C -0.10 -4.95 9.91 21.98 0.22 -4.73 15 12 C -0.25 -11.99 9.98 22.32 0.22 -11.77 15 13 C -0.02 -0.72 6.66 22.57 0.15 -0.57 15 14 C -0.23 -11.41 4.64 -18.53 -0.09 -11.50 15 15 C 0.07 2.66 8.90 23.76 0.21 2.87 15 16 C -0.28 -9.53 9.90 22.52 0.22 -9.30 15 17 C 0.50 18.38 7.22 68.71 0.50 18.88 15 18 O -0.54 -24.29 12.75 19.37 0.25 -24.05 15 19 O -0.51 -14.34 13.54 -58.67 -0.79 -15.13 15 20 H 0.29 13.35 8.29 -92.71 -0.77 12.58 15 21 H 0.11 6.26 6.15 -2.91 -0.02 6.24 15 22 H 0.10 4.60 8.06 -2.91 -0.02 4.58 15 23 H 0.11 4.45 8.06 -2.91 -0.02 4.42 15 24 H 0.09 4.07 7.18 -2.91 -0.02 4.05 15 25 H 0.14 5.08 8.06 -2.91 -0.02 5.06 15 26 H 0.16 4.29 8.06 -2.92 -0.02 4.27 15 27 H 0.42 8.19 8.98 -74.06 -0.67 7.53 15 Total: -1.00 -63.15 243.62 4.42 -58.73 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.53 Total: 27.06 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 2.18 Total: -43.45 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.23 Total: -41.72 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.55 Total: -39.18 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.55 kcal Total: -63.15 4.42 -58.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223081847.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.258 kcal (2) G-P(sol) polarization free energy of solvation -63.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds