Wall clock time and date at job start Mon Mar 30 2020 02:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86802 * 119.99630 * 2 1 4 4 H 1.48504 * 109.46819 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47138 * 299.99713 * 3 2 1 6 6 H 1.48496 * 109.47360 * 60.00006 * 3 2 1 7 7 C 1.40103 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.41556 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.40854 * 120.64923 * 179.97438 * 9 7 2 11 11 C 1.38501 * 118.17594 * 180.02562 * 10 9 7 12 12 Cl 1.73598 * 120.38706 * 179.97438 * 11 10 9 13 13 N 1.32548 * 119.23326 * 0.02562 * 11 10 9 14 14 C 1.32144 * 121.26076 * 359.97438 * 13 11 10 15 15 Cl 1.73598 * 118.99074 * 180.27993 * 14 13 11 16 16 N 1.31534 * 122.02103 * 359.97438 * 14 13 11 17 17 H 0.97001 * 120.00373 * 0.02562 * 1 2 3 18 18 H 1.08000 * 120.91142 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8819 2.3965 1.2124 7 6 2.0073 -1.2133 0.0005 8 1 3.0873 -1.2133 0.0001 9 6 1.2995 -2.4392 0.0005 10 6 1.9900 -3.6670 0.0005 11 6 1.2464 -4.8354 0.0000 12 17 2.0383 -6.3803 -0.0007 13 7 -0.0770 -4.7605 -0.0010 14 6 -0.6978 -3.5940 -0.0010 15 17 -2.4336 -3.5647 0.0050 16 7 -0.0410 -2.4544 0.0005 17 1 -0.4851 0.8400 -0.0004 18 1 3.0696 -3.6964 0.0001 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231484716.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:26 Heat of formation + Delta-G solvation = 18.539334 kcal Electronic energy + Delta-G solvation = -10241.005873 eV Core-core repulsion = 7937.982200 eV Total energy + Delta-G solvation = -2303.023673 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 217.971 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.16680 -36.00359 -35.73076 -34.26368 -31.64611 -30.48290 -26.74668 -22.82991 -22.21884 -18.25043 -16.74314 -15.49377 -15.02129 -14.24331 -13.98410 -13.35795 -13.11898 -11.74422 -11.57421 -11.54500 -11.16049 -10.77108 -10.65850 -10.42234 -10.35023 -9.83810 -9.49272 -8.84040 -8.20423 -7.89553 -6.80818 -5.12784 2.18592 2.33797 2.44102 2.90611 2.94148 2.97188 2.97707 3.68453 4.38358 5.37970 5.78843 6.14442 6.38264 6.65407 6.74533 7.09360 7.68670 8.05586 8.34533 8.46133 9.55650 9.88703 Molecular weight = 217.97amu Principal moments of inertia in cm(-1) A = 0.029452 B = 0.011326 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.472220 B = 2471.693883 C = 3412.323987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.061 3.939 3 Si 0.920 3.080 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.099 0.901 9 C 0.276 3.724 10 C -0.299 4.299 11 C 0.237 3.763 12 Cl -0.072 7.072 13 N -0.619 5.619 14 C 0.392 3.608 15 Cl -0.028 7.028 16 N -0.501 5.501 17 H 0.283 0.717 18 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 -0.616 0.003 1.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.168 4.168 3 Si 0.742 3.258 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.117 0.883 9 C 0.150 3.850 10 C -0.328 4.328 11 C 0.073 3.927 12 Cl -0.044 7.044 13 N -0.349 5.349 14 C 0.095 3.905 15 Cl 0.000 7.000 16 N -0.224 5.224 17 H 0.095 0.905 18 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.662 -0.588 0.004 0.886 hybrid contribution 1.021 0.384 -0.002 1.091 sum 1.683 -0.204 0.002 1.696 Atomic orbital electron populations 1.70062 1.07478 1.29163 1.24294 1.26248 0.95140 1.01862 0.93571 0.86054 0.80767 0.79934 0.79012 1.17947 1.19377 1.19370 1.19852 0.94920 0.88506 1.39332 0.88268 1.18626 0.86419 0.91877 0.88106 1.22236 1.00609 0.91872 1.18082 1.21079 0.89123 0.85355 0.97112 1.98316 1.77878 1.31397 1.96806 1.66583 1.09149 1.29652 1.29505 1.22404 0.87586 0.85351 0.95158 1.98314 1.06533 1.98483 1.96688 1.68817 1.08601 1.24643 1.20339 0.90537 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.88 11.52 55.55 0.64 -16.24 13 2 C 0.06 1.40 5.50 -17.34 -0.10 1.31 13 3 Si 0.92 16.62 29.56 -169.99 -5.02 11.60 13 4 H -0.26 -4.50 7.11 56.52 0.40 -4.10 13 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 13 6 H -0.27 -4.82 7.11 56.52 0.40 -4.42 13 7 C -0.39 -9.48 9.19 -37.62 -0.35 -9.82 13 8 H 0.10 2.16 7.85 -52.49 -0.41 1.75 13 9 C 0.28 7.11 6.58 -84.64 -0.56 6.55 13 10 C -0.30 -7.00 9.75 -38.50 -0.38 -7.38 13 11 C 0.24 5.51 7.33 -17.15 -0.13 5.38 13 12 Cl -0.07 -1.38 29.15 -51.86 -1.51 -2.89 13 13 N -0.62 -15.35 10.38 -8.84 -0.09 -15.44 13 14 C 0.39 9.91 8.17 -92.08 -0.75 9.16 13 15 Cl -0.03 -0.59 29.26 -51.86 -1.52 -2.11 13 16 N -0.50 -13.39 8.01 -9.60 -0.08 -13.46 13 17 H 0.28 6.18 8.29 -40.82 -0.34 5.84 13 18 H 0.13 2.62 8.06 -52.49 -0.42 2.20 13 LS Contribution 209.93 15.07 3.16 3.16 Total: -1.00 -26.68 209.93 -6.64 -33.32 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: 0.03 Total: -3.14 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.25 Total: 5.21 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.47 Total: -45.15 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.02 Total: 11.60 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -3.03 Total: -5.00 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -26.68 -6.64 -33.32 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231484716.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.863 kcal (2) G-P(sol) polarization free energy of solvation -26.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds