Wall clock time and date at job start Mon Mar 30 2020 02:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86802 * 119.99630 * 2 1 4 4 H 1.48504 * 109.46819 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47138 * 299.99713 * 3 2 1 6 6 H 1.48496 * 109.47360 * 60.00006 * 3 2 1 7 7 C 1.40103 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.41556 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.40854 * 120.64923 * 179.97438 * 9 7 2 11 11 C 1.38501 * 118.17594 * 180.02562 * 10 9 7 12 12 Cl 1.73598 * 120.38706 * 179.97438 * 11 10 9 13 13 N 1.32548 * 119.23326 * 0.02562 * 11 10 9 14 14 C 1.32144 * 121.26076 * 359.97438 * 13 11 10 15 15 Cl 1.73598 * 118.99074 * 180.27993 * 14 13 11 16 16 N 1.31534 * 122.02103 * 359.97438 * 14 13 11 17 17 H 0.97001 * 120.00373 * 0.02562 * 1 2 3 18 18 H 1.08000 * 120.91142 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8819 2.3965 1.2124 7 6 2.0073 -1.2133 0.0005 8 1 3.0873 -1.2133 0.0001 9 6 1.2995 -2.4392 0.0005 10 6 1.9900 -3.6670 0.0005 11 6 1.2464 -4.8354 0.0000 12 17 2.0383 -6.3803 -0.0007 13 7 -0.0770 -4.7605 -0.0010 14 6 -0.6978 -3.5940 -0.0010 15 17 -2.4336 -3.5647 0.0050 16 7 -0.0410 -2.4544 0.0005 17 1 -0.4851 0.8400 -0.0004 18 1 3.0696 -3.6964 0.0001 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231484716.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:26 Heat of formation + Delta-G solvation = 2.995069 kcal Electronic energy + Delta-G solvation = -10241.679923 eV Core-core repulsion = 7937.982200 eV Total energy + Delta-G solvation = -2303.697723 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 217.971 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.99351 -37.70975 -37.47737 -36.03750 -33.48237 -32.31437 -28.57085 -24.67126 -24.04876 -20.04608 -18.55901 -17.31950 -16.62691 -16.02259 -15.83432 -15.14416 -14.70818 -13.42739 -13.17023 -13.14606 -12.93418 -12.38689 -12.33176 -12.06060 -11.90165 -11.52534 -11.31788 -10.65115 -10.01795 -9.75095 -8.55165 -6.97474 0.35140 0.56475 0.63916 1.15071 1.44841 1.53806 1.62449 2.17648 2.62808 3.52100 3.97064 4.34281 4.61566 4.85293 5.01285 5.28055 5.89489 6.24861 6.52168 6.63549 7.69845 8.19540 Molecular weight = 217.97amu Principal moments of inertia in cm(-1) A = 0.029452 B = 0.011326 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.472220 B = 2471.693883 C = 3412.323987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.018 3.982 3 Si 1.001 2.999 4 H -0.244 1.244 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.407 4.407 8 H 0.118 0.882 9 C 0.240 3.760 10 C -0.303 4.303 11 C 0.224 3.776 12 Cl -0.036 7.036 13 N -0.632 5.632 14 C 0.375 3.625 15 Cl -0.006 7.006 16 N -0.529 5.529 17 H 0.292 0.708 18 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 0.044 0.003 3.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.208 4.208 3 Si 0.820 3.180 4 H -0.167 1.167 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.439 4.439 8 H 0.136 0.864 9 C 0.115 3.885 10 C -0.332 4.332 11 C 0.061 3.939 12 Cl -0.007 7.007 13 N -0.363 5.363 14 C 0.077 3.923 15 Cl 0.021 6.979 16 N -0.253 5.253 17 H 0.103 0.897 18 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.824 0.035 0.004 1.824 hybrid contribution 0.653 0.117 -0.002 0.663 sum 2.477 0.152 0.002 2.481 Atomic orbital electron populations 1.70140 1.09371 1.30776 1.24547 1.27272 0.95835 1.05315 0.92358 0.84853 0.79633 0.74595 0.78950 1.16720 1.19019 1.19008 1.20382 0.96015 0.88850 1.38685 0.86419 1.19154 0.86715 0.93465 0.89199 1.22423 1.01616 0.91413 1.17743 1.21415 0.88937 0.87054 0.96485 1.98315 1.77010 1.28806 1.96598 1.66732 1.09941 1.29392 1.30215 1.22782 0.88809 0.85520 0.95161 1.98301 1.04521 1.98470 1.96578 1.68822 1.09437 1.25433 1.21632 0.89717 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -35.58 11.52 21.85 0.25 -35.32 13 2 C 0.02 0.82 5.50 85.32 0.47 1.29 13 3 Si 1.00 32.76 29.56 68.60 2.03 34.79 13 4 H -0.24 -7.47 7.11 99.48 0.71 -6.76 13 5 H -0.27 -8.49 7.11 99.48 0.71 -7.79 13 6 H -0.27 -8.49 7.11 99.48 0.71 -7.78 13 7 C -0.41 -19.31 9.19 23.54 0.22 -19.10 13 8 H 0.12 4.94 7.85 -2.91 -0.02 4.92 13 9 C 0.24 12.38 6.58 40.26 0.26 12.64 13 10 C -0.30 -14.02 9.75 22.97 0.22 -13.80 13 11 C 0.22 10.25 7.33 84.65 0.62 10.87 13 12 Cl -0.04 -1.30 29.15 -2.72 -0.08 -1.38 13 13 N -0.63 -31.23 10.38 -181.87 -1.89 -33.12 13 14 C 0.37 19.05 8.17 180.86 1.48 20.53 13 15 Cl -0.01 -0.27 29.26 -2.72 -0.08 -0.34 13 16 N -0.53 -28.56 8.01 -184.28 -1.48 -30.04 13 17 H 0.29 12.68 8.29 -92.71 -0.77 11.91 13 18 H 0.15 5.93 8.06 -2.91 -0.02 5.91 13 Total: -1.00 -55.91 209.93 3.34 -52.57 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: 1.31 Total: 0.41 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 3.27 Total: 12.44 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -3.11 Total: -98.48 kcal Atomic # 14 Polarization: 32.76 SS G_CDS: 2.03 Total: 34.79 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.16 Total: -1.73 kcal Total: -55.91 3.34 -52.57 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231484716.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.566 kcal (2) G-P(sol) polarization free energy of solvation -55.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds