Wall clock time and date at job start Mon Mar 30 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48498 * 109.47357 * 270.00185 * 3 2 1 5 5 H 1.48505 * 109.46943 * 30.00489 * 3 2 1 6 6 H 1.48505 * 109.46878 * 149.99966 * 3 2 1 7 7 C 1.37870 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00507 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99994 * 180.02562 * 7 2 1 10 10 O 1.42900 * 109.47479 * 179.97438 * 9 7 2 11 11 C 1.35947 * 117.00292 * 179.97438 * 10 9 7 12 12 C 1.40430 * 119.09800 * 0.31245 * 11 10 9 13 13 C 1.35387 * 121.88483 * 180.32562 * 12 11 10 14 14 C 1.41357 * 119.55124 * 359.67171 * 13 12 11 15 15 C 1.37146 * 135.74481 * 180.02562 * 14 13 12 16 16 O 1.33951 * 108.68974 * 179.97438 * 15 14 13 17 17 C 1.34091 * 111.48948 * 359.97438 * 16 15 14 18 18 C 1.37078 * 108.67319 * 0.02562 * 17 16 15 19 19 C 1.35908 * 119.09637 * 179.97438 * 11 10 9 20 20 H 0.96995 * 119.99954 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47516 * 59.99349 * 9 7 2 22 22 H 1.09006 * 109.46839 * 299.99626 * 9 7 2 23 23 H 1.07996 * 119.05779 * 359.97438 * 12 11 10 24 24 H 1.07999 * 120.22183 * 179.68993 * 13 12 11 25 25 H 1.07995 * 125.65463 * 359.96168 * 15 14 13 26 26 H 1.07995 * 125.66120 * 179.97438 * 17 16 15 27 27 H 1.08002 * 120.29431 * 0.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 8 3.9880 -2.5412 -0.0001 11 6 5.3358 -2.7193 -0.0001 12 6 6.1735 -1.5923 0.0066 13 6 7.5228 -1.7041 0.0004 14 6 8.1159 -2.9872 -0.0062 15 6 9.3969 -3.4771 -0.0129 16 8 9.3445 -4.8156 -0.0167 17 6 8.0785 -5.2576 -0.0122 18 6 7.2361 -4.1763 -0.0057 19 6 5.8354 -3.9832 0.0003 20 1 -0.4850 0.8400 0.0004 21 1 3.8746 -0.6806 0.8904 22 1 3.8752 -0.6795 -0.8895 23 1 5.7288 -0.6081 0.0113 24 1 8.1416 -0.8190 0.0008 25 1 10.2983 -2.8824 -0.0151 26 1 7.7733 -6.2936 -0.0142 27 1 5.1684 -4.8327 0.0003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231528877.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:51 Heat of formation + Delta-G solvation = -26.076793 kcal Electronic energy + Delta-G solvation = -13621.564562 eV Core-core repulsion = 11117.703311 eV Total energy + Delta-G solvation = -2503.861251 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.34931 -40.53381 -37.52252 -35.01962 -32.84018 -32.01128 -30.55539 -28.86970 -25.15246 -24.54192 -22.67760 -21.55199 -19.46392 -18.78470 -18.35106 -17.29215 -17.00556 -16.75350 -16.51067 -15.70380 -15.41788 -14.76764 -14.52791 -13.94146 -13.66950 -13.62949 -13.08310 -13.06767 -12.79161 -12.02311 -11.90228 -11.81597 -11.37780 -10.95191 -10.77142 -9.64125 -8.45518 -8.19549 -6.56891 -0.37321 0.78699 1.29911 1.33601 1.43867 1.44670 2.13747 2.23401 2.57032 2.76224 2.86774 3.47316 3.79823 3.96344 4.23595 4.34757 4.39189 4.47838 4.67557 4.75966 4.99493 5.20449 5.22388 5.32693 5.39695 5.48475 5.71463 5.97093 6.14050 6.47378 6.76609 7.07610 8.71269 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.064820 B = 0.006358 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.858763 B = 4402.713801 C = 4819.414156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.242 1.242 7 C -0.558 4.558 8 H 0.033 0.967 9 C 0.183 3.817 10 O -0.339 6.339 11 C 0.107 3.893 12 C -0.211 4.211 13 C -0.025 4.025 14 C -0.210 4.210 15 C 0.009 3.991 16 O -0.145 6.145 17 C -0.049 4.049 18 C -0.141 4.141 19 C -0.172 4.172 20 H 0.277 0.723 21 H 0.027 0.973 22 H 0.025 0.975 23 H 0.128 0.872 24 H 0.166 0.834 25 H 0.259 0.741 26 H 0.240 0.760 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.055 -3.402 -0.018 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.165 1.165 7 C -0.595 4.595 8 H 0.051 0.949 9 C 0.109 3.891 10 O -0.253 6.253 11 C 0.061 3.939 12 C -0.229 4.229 13 C -0.043 4.043 14 C -0.212 4.212 15 C -0.061 4.061 16 O -0.035 6.035 17 C -0.117 4.117 18 C -0.142 4.142 19 C -0.192 4.192 20 H 0.086 0.914 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.146 0.854 24 H 0.184 0.816 25 H 0.275 0.725 26 H 0.256 0.744 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 21.957 -3.627 -0.018 22.254 hybrid contribution -1.021 0.798 -0.009 1.295 sum 20.936 -2.830 -0.026 21.126 Atomic orbital electron populations 1.70008 1.08262 1.29185 1.49929 1.25816 0.95864 1.03404 0.92919 0.85638 0.79633 0.77193 0.80160 1.17962 1.19346 1.16507 1.21040 0.90157 0.94391 1.53951 0.94893 1.20637 0.93608 0.78577 0.96305 1.86102 1.19228 1.31918 1.88051 1.19057 0.82909 0.94969 0.96933 1.21148 0.95410 0.98025 1.08367 1.20452 0.93057 0.96264 0.94486 1.20085 0.94326 0.94725 1.12021 1.24902 0.98366 0.79950 1.02856 1.83720 1.29673 1.23044 1.67099 1.24368 0.78677 0.99254 1.09386 1.19517 0.93109 0.94625 1.06968 1.19262 0.93330 0.94620 1.11949 0.91394 0.95569 0.95692 0.85375 0.81639 0.72535 0.74358 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.96 21.45 0.30 -58.28 15 2 C 0.02 1.13 5.47 84.65 0.46 1.59 15 3 Si 0.95 42.43 27.47 68.60 1.88 44.31 15 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 6 H -0.24 -9.80 6.54 99.48 0.65 -9.15 15 7 C -0.56 -34.42 9.99 25.60 0.26 -34.17 15 8 H 0.03 2.29 8.06 -2.91 -0.02 2.26 15 9 C 0.18 9.43 3.53 71.24 0.25 9.69 15 10 O -0.34 -17.31 10.08 -92.96 -0.94 -18.25 15 11 C 0.11 4.50 6.62 22.26 0.15 4.65 15 12 C -0.21 -7.50 8.88 22.15 0.20 -7.30 15 13 C -0.02 -0.67 10.08 22.38 0.23 -0.45 15 14 C -0.21 -5.50 6.39 -20.20 -0.13 -5.63 15 15 C 0.01 0.16 12.17 67.56 0.82 0.98 15 16 O -0.14 -2.81 10.49 2.89 0.03 -2.78 15 17 C -0.05 -1.06 12.18 67.55 0.82 -0.24 15 18 C -0.14 -4.25 6.39 -20.21 -0.13 -4.38 15 19 C -0.17 -6.41 9.99 22.51 0.22 -6.19 15 20 H 0.28 15.78 8.31 -92.71 -0.77 15.01 15 21 H 0.03 1.30 6.65 -2.39 -0.02 1.28 15 22 H 0.03 1.22 7.05 -2.38 -0.02 1.20 15 23 H 0.13 4.48 6.12 -2.91 -0.02 4.46 15 24 H 0.17 3.00 8.06 -2.91 -0.02 2.98 15 25 H 0.26 1.66 8.06 -2.91 -0.02 1.64 15 26 H 0.24 3.38 8.06 -2.91 -0.02 3.36 15 27 H 0.12 4.45 8.06 -2.91 -0.02 4.43 15 Total: -1.00 -75.24 242.86 5.56 -69.69 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.13 Total: 6.74 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 3.15 Total: -41.43 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.30 Total: -58.28 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.91 Total: -21.03 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.31 kcal Total: -75.24 5.56 -69.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231528877.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.613 kcal (2) G-P(sol) polarization free energy of solvation -75.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds