Wall clock time and date at job start Mon Mar 30 2020 02:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47141 * 239.99834 * 3 2 1 5 5 H 1.48501 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47146 * 119.99621 * 3 2 1 7 7 C 1.37876 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00149 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47580 * 179.97438 * 9 7 2 11 11 C 1.35785 * 117.00164 * 180.02562 * 10 9 7 12 12 C 1.36024 * 120.37007 * 0.02562 * 11 10 9 13 13 C 1.39757 * 122.43871 * 179.97438 * 12 11 10 14 14 C 1.35462 * 122.56223 * 0.02562 * 13 12 11 15 15 C 1.45741 * 119.44266 * 359.97438 * 14 13 12 16 16 C 1.36887 * 136.25197 * 179.97438 * 15 14 13 17 17 O 1.34137 * 108.65470 * 180.02562 * 16 15 14 18 18 C 1.33992 * 111.47364 * 359.75649 * 17 16 15 19 19 C 1.36854 * 108.68766 * 0.40061 * 18 17 16 20 20 H 0.97002 * 120.00471 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46980 * 59.99370 * 9 7 2 22 22 H 1.08997 * 109.47216 * 300.00056 * 9 7 2 23 23 H 1.08003 * 118.77819 * 359.95785 * 12 11 10 24 24 H 1.07995 * 118.71445 * 179.97438 * 13 12 11 25 25 H 1.08000 * 120.28217 * 179.97438 * 14 13 12 26 26 H 1.08005 * 125.67411 * 0.02562 * 16 15 14 27 27 H 1.08005 * 125.65298 * 180.32306 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.6607 -4.8400 0.0000 12 6 0.3134 -5.0270 -0.0010 13 6 -0.2671 -6.2983 -0.0022 14 6 0.4687 -7.4357 -0.0018 15 6 1.9234 -7.3479 -0.0007 16 6 2.9676 -8.2331 0.0003 17 8 4.1167 -7.5412 0.0016 18 6 3.8937 -6.2200 -0.0039 19 6 2.5425 -6.0033 0.0000 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 -0.3317 -4.1608 -0.0007 24 1 -1.3442 -6.3769 -0.0025 25 1 -0.0186 -8.3995 -0.0023 26 1 2.8806 -9.3096 0.0002 27 1 4.6543 -5.4532 -0.0092 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231528905.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:53 Heat of formation + Delta-G solvation = -28.938622 kcal Electronic energy + Delta-G solvation = -13679.550835 eV Core-core repulsion = 11175.565486 eV Total energy + Delta-G solvation = -2503.985349 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.33850 -40.28838 -37.41789 -35.08907 -32.65831 -31.72227 -29.80499 -28.93220 -25.66472 -24.21941 -22.99398 -21.46156 -19.17654 -18.67766 -18.12226 -17.41216 -17.08822 -16.63426 -16.38760 -15.92093 -15.51481 -14.89887 -14.29414 -13.77199 -13.41418 -13.25653 -13.08900 -12.77449 -12.58068 -12.20547 -12.07493 -12.00325 -11.41743 -10.77366 -10.28595 -10.12578 -8.41757 -8.15618 -6.57291 -0.23983 0.81054 1.37932 1.37961 1.43203 1.51618 2.00227 2.24082 2.60439 2.75740 2.92840 3.36873 3.81467 4.03652 4.19626 4.43024 4.43653 4.70248 4.72794 4.84419 4.90720 5.20123 5.25372 5.41695 5.49747 5.65237 5.78742 5.91129 6.05655 6.46911 6.73952 7.14760 8.70510 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.048138 B = 0.006687 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.522451 B = 4186.155974 C = 4752.533622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.991 3.009 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.559 4.559 8 H 0.070 0.930 9 C 0.214 3.786 10 O -0.331 6.331 11 C 0.151 3.849 12 C -0.269 4.269 13 C -0.093 4.093 14 C -0.117 4.117 15 C -0.158 4.158 16 C -0.017 4.017 17 O -0.147 6.147 18 C -0.001 4.001 19 C -0.196 4.196 20 H 0.275 0.725 21 H 0.000 1.000 22 H 0.000 1.000 23 H 0.103 0.897 24 H 0.141 0.859 25 H 0.164 0.836 26 H 0.263 0.737 27 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -14.967 -0.015 15.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.088 0.912 9 C 0.140 3.860 10 O -0.244 6.244 11 C 0.104 3.896 12 C -0.288 4.288 13 C -0.111 4.111 14 C -0.135 4.135 15 C -0.160 4.160 16 C -0.085 4.085 17 O -0.038 6.038 18 C -0.071 4.071 19 C -0.197 4.197 20 H 0.084 0.916 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.121 0.879 24 H 0.158 0.842 25 H 0.182 0.818 26 H 0.279 0.721 27 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.532 -14.906 -0.014 15.579 hybrid contribution -0.610 1.442 0.002 1.565 sum 3.922 -13.464 -0.012 14.024 Atomic orbital electron populations 1.70060 1.07878 1.29213 1.49294 1.26012 0.96032 1.03494 0.93311 0.85120 0.78034 0.76020 0.79570 1.18755 1.19800 1.18768 1.21282 0.94461 0.89902 1.53981 0.91207 1.20201 0.88423 0.82473 0.94867 1.85933 1.39186 1.12773 1.86547 1.19590 0.91972 0.83577 0.94483 1.20694 0.93342 0.99709 1.15081 1.20490 1.00725 0.90574 0.99356 1.21326 0.89119 0.99060 1.03989 1.20947 0.95924 0.90766 1.08315 1.24803 0.79457 0.98418 1.05782 1.83784 1.34576 1.17479 1.68000 1.24366 0.95751 0.82948 1.04024 1.20325 0.94207 0.92486 1.12687 0.91647 0.98207 0.98198 0.87931 0.84168 0.81814 0.72099 0.75200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.29 21.45 0.28 -55.12 15 2 C 0.01 0.63 5.46 84.65 0.46 1.10 15 3 Si 0.99 43.73 29.54 68.60 2.03 45.76 15 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 7 C -0.56 -33.32 9.43 25.60 0.24 -33.08 15 8 H 0.07 4.04 7.81 -2.91 -0.02 4.02 15 9 C 0.21 12.38 4.49 71.24 0.32 12.70 15 10 O -0.33 -17.48 10.15 -91.14 -0.93 -18.41 15 11 C 0.15 6.91 6.87 23.76 0.16 7.08 15 12 C -0.27 -11.64 8.95 22.12 0.20 -11.44 15 13 C -0.09 -3.13 9.85 22.00 0.22 -2.91 15 14 C -0.12 -3.27 10.28 23.57 0.24 -3.03 15 15 C -0.16 -4.74 6.59 -19.06 -0.13 -4.86 15 16 C -0.02 -0.36 12.17 67.50 0.82 0.46 15 17 O -0.15 -3.62 10.50 2.08 0.02 -3.60 15 18 C 0.00 -0.04 12.16 67.50 0.82 0.78 15 19 C -0.20 -7.33 6.57 -19.00 -0.12 -7.45 15 20 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 21 H 0.00 0.01 7.65 -2.39 -0.02 -0.01 15 22 H 0.00 0.02 7.65 -2.39 -0.02 0.00 15 23 H 0.10 4.86 6.13 -2.91 -0.02 4.84 15 24 H 0.14 3.83 8.06 -2.91 -0.02 3.80 15 25 H 0.16 3.05 8.06 -2.91 -0.02 3.02 15 26 H 0.26 2.46 8.06 -2.91 -0.02 2.43 15 27 H 0.23 5.84 8.06 -2.91 -0.02 5.82 15 Total: -1.00 -71.16 247.40 5.82 -65.34 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.18 Total: 6.68 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.24 Total: -40.66 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.28 Total: -55.12 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.90 Total: -22.00 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.16 5.82 -65.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231528905.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.396 kcal (2) G-P(sol) polarization free energy of solvation -71.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds