Wall clock time and date at job start Mon Mar 30 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00092 * 2 1 4 4 H 1.48499 * 109.47225 * 270.00223 * 3 2 1 5 5 H 1.48501 * 109.47058 * 30.00732 * 3 2 1 6 6 H 1.48500 * 109.46996 * 150.00124 * 3 2 1 7 7 C 1.37879 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00251 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00078 * 179.97438 * 7 2 1 10 10 S 1.81397 * 109.47452 * 179.97438 * 9 7 2 11 11 O 1.42100 * 109.46829 * 63.61710 * 10 9 7 12 12 C 1.81404 * 103.00143 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.46946 * 180.02562 * 12 10 9 14 14 H 1.08995 * 110.27966 * 60.63691 * 13 12 10 15 15 C 1.54949 * 110.30909 * 182.83542 * 13 12 10 16 16 C 1.55305 * 100.94358 * 155.35726 * 15 13 12 17 17 C 1.54384 * 102.24984 * 325.86542 * 16 15 13 18 18 O 1.43233 * 107.59237 * 21.35947 * 17 16 15 19 19 H 0.96996 * 120.00088 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47042 * 60.00161 * 9 7 2 21 21 H 1.09007 * 109.47150 * 300.00600 * 9 7 2 22 22 H 1.09002 * 109.47124 * 60.00087 * 12 10 9 23 23 H 1.09001 * 109.46975 * 300.00209 * 12 10 9 24 24 H 1.08999 * 111.12708 * 273.28191 * 15 13 12 25 25 H 1.09003 * 111.12269 * 37.43874 * 15 13 12 26 26 H 1.08999 * 110.84510 * 207.67792 * 16 15 13 27 27 H 1.08997 * 111.02021 * 84.13339 * 16 15 13 28 28 H 1.09003 * 109.83208 * 261.84190 * 17 16 15 29 29 H 1.09008 * 109.90175 * 140.91314 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 16 4.1161 -2.9044 -0.0010 11 8 3.7122 -3.5496 -1.2009 12 6 5.9186 -2.7000 -0.0009 13 6 6.5879 -4.0759 -0.0014 14 1 6.3023 -4.6346 -0.8927 15 6 8.1283 -3.9247 0.0705 16 6 8.5296 -5.2889 0.6948 17 6 7.3432 -5.5785 1.6393 18 8 6.2271 -4.8063 1.1817 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6806 0.8889 21 1 3.8745 -0.6801 -0.8911 22 1 6.2217 -2.1484 0.8890 23 1 6.2217 -2.1485 -0.8909 24 1 8.5583 -3.8061 -0.9241 25 1 8.4118 -3.0967 0.7202 26 1 9.4596 -5.1999 1.2563 27 1 8.6130 -6.0599 -0.0710 28 1 7.6016 -5.2877 2.6576 29 1 7.0957 -6.6397 1.6095 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236413705.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:37 Heat of formation + Delta-G solvation = -91.675320 kcal Electronic energy + Delta-G solvation = -12790.507612 eV Core-core repulsion = 10419.245747 eV Total energy + Delta-G solvation = -2371.261865 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.35362 -34.69718 -32.97882 -32.29508 -31.48350 -29.34612 -26.10931 -22.66284 -21.79646 -21.08124 -17.10086 -16.91801 -16.47850 -15.94854 -14.86804 -14.46295 -14.41779 -13.76798 -13.38142 -13.24369 -12.65678 -12.37187 -12.15169 -11.85401 -11.62492 -11.32830 -11.17884 -10.96719 -10.87156 -10.55523 -10.04451 -9.54541 -9.48309 -8.95294 -8.66485 -7.21546 -6.13829 -4.16781 2.39330 3.24358 3.31789 3.33208 3.72344 3.81661 4.36734 4.39168 4.58856 4.74875 4.91781 5.12171 5.18706 5.20457 5.36653 5.52107 5.60151 5.68237 5.72821 5.86208 6.02389 6.21183 6.61335 6.72839 7.03142 7.53978 8.27492 8.85502 9.44793 10.98080 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.058967 B = 0.006929 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.731800 B = 4040.120993 C = 4254.291459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.883 3.117 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.081 0.919 9 C -0.310 4.310 10 S 1.248 4.752 11 O -0.860 6.860 12 C -0.467 4.467 13 C 0.107 3.893 14 H 0.074 0.926 15 C -0.148 4.148 16 C -0.158 4.158 17 C 0.051 3.949 18 O -0.373 6.373 19 H 0.267 0.733 20 H 0.071 0.929 21 H 0.032 0.968 22 H 0.116 0.884 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.253 -6.993 5.185 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.550 4.550 8 H 0.099 0.901 9 C -0.450 4.450 10 S 1.448 4.552 11 O -0.856 6.856 12 C -0.601 4.601 13 C 0.049 3.951 14 H 0.091 0.909 15 C -0.187 4.187 16 C -0.196 4.196 17 C -0.026 4.026 18 O -0.292 6.292 19 H 0.077 0.923 20 H 0.089 0.911 21 H 0.051 0.949 22 H 0.134 0.866 23 H 0.107 0.893 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.400 -7.737 5.259 18.880 hybrid contribution 1.359 2.229 -1.991 3.283 sum 17.758 -5.508 3.268 18.878 Atomic orbital electron populations 1.69889 1.06251 1.27254 1.49626 1.24968 0.94685 0.99070 0.93844 0.86723 0.80386 0.83377 0.78544 1.20416 1.20976 1.18837 1.20282 0.86501 0.95367 1.52872 0.90096 1.25467 1.05014 1.12852 1.01653 1.70554 0.82424 0.90341 1.11917 1.92994 1.74934 1.66087 1.51578 1.27942 1.25162 1.00037 1.06975 1.22414 0.93023 0.90948 0.88761 0.90858 1.23329 0.95705 0.97686 1.01994 1.23129 0.99180 0.97691 0.99562 1.23098 0.85805 0.95934 0.97780 1.88449 1.35351 1.61831 1.43602 0.92337 0.91063 0.94921 0.86582 0.89289 0.90255 0.90041 0.90182 0.90682 0.91184 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.53 13.96 55.43 0.77 -26.76 15 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 15 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 15 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.26 -6.00 6.54 56.52 0.37 -5.63 15 7 C -0.51 -14.79 9.68 -34.44 -0.33 -15.12 15 8 H 0.08 2.52 7.96 -52.49 -0.42 2.10 15 9 C -0.31 -7.31 4.75 36.00 0.17 -7.14 15 10 S 1.25 24.96 12.79 -107.50 -1.38 23.58 15 11 O -0.86 -22.30 18.14 -35.23 -0.64 -22.93 15 12 C -0.47 -7.18 5.68 37.16 0.21 -6.97 15 13 C 0.11 1.51 3.48 -25.70 -0.09 1.42 15 14 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 15 C -0.15 -1.57 6.57 -24.48 -0.16 -1.73 15 16 C -0.16 -1.38 7.02 -24.78 -0.17 -1.56 15 17 C 0.05 0.51 7.79 37.88 0.30 0.81 15 18 O -0.37 -5.23 10.72 -35.23 -0.38 -5.61 15 19 H 0.27 7.62 8.31 -40.82 -0.34 7.28 15 20 H 0.07 1.51 7.20 -51.92 -0.37 1.13 15 21 H 0.03 0.79 7.57 -51.92 -0.39 0.39 15 22 H 0.12 1.51 8.14 -51.92 -0.42 1.08 15 23 H 0.09 1.37 8.14 -51.92 -0.42 0.95 15 24 H 0.08 0.77 8.14 -51.93 -0.42 0.34 15 25 H 0.08 0.80 8.06 -51.93 -0.42 0.38 15 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 15 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 15 29 H 0.07 0.61 8.14 -51.92 -0.42 0.19 15 LS Contribution 258.50 15.07 3.90 3.90 Total: -1.00 -35.64 258.50 -6.72 -42.36 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -4.15 Total: -3.37 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -0.18 Total: -28.09 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.02 Total: -28.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: 24.96 SS G_CDS: -1.38 Total: 23.58 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -35.64 -6.72 -42.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236413705.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.316 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds