Wall clock time and date at job start Mon Mar 30 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00092 * 2 1 4 4 H 1.48499 * 109.47225 * 270.00223 * 3 2 1 5 5 H 1.48501 * 109.47058 * 30.00732 * 3 2 1 6 6 H 1.48500 * 109.46996 * 150.00124 * 3 2 1 7 7 C 1.37879 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00251 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00078 * 179.97438 * 7 2 1 10 10 S 1.81397 * 109.47452 * 179.97438 * 9 7 2 11 11 O 1.42100 * 109.46829 * 63.61710 * 10 9 7 12 12 C 1.81404 * 103.00143 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.46946 * 180.02562 * 12 10 9 14 14 H 1.08995 * 110.27966 * 60.63691 * 13 12 10 15 15 C 1.54949 * 110.30909 * 182.83542 * 13 12 10 16 16 C 1.55305 * 100.94358 * 155.35726 * 15 13 12 17 17 C 1.54384 * 102.24984 * 325.86542 * 16 15 13 18 18 O 1.43233 * 107.59237 * 21.35947 * 17 16 15 19 19 H 0.96996 * 120.00088 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47042 * 60.00161 * 9 7 2 21 21 H 1.09007 * 109.47150 * 300.00600 * 9 7 2 22 22 H 1.09002 * 109.47124 * 60.00087 * 12 10 9 23 23 H 1.09001 * 109.46975 * 300.00209 * 12 10 9 24 24 H 1.08999 * 111.12708 * 273.28191 * 15 13 12 25 25 H 1.09003 * 111.12269 * 37.43874 * 15 13 12 26 26 H 1.08999 * 110.84510 * 207.67792 * 16 15 13 27 27 H 1.08997 * 111.02021 * 84.13339 * 16 15 13 28 28 H 1.09003 * 109.83208 * 261.84190 * 17 16 15 29 29 H 1.09008 * 109.90175 * 140.91314 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 16 4.1161 -2.9044 -0.0010 11 8 3.7122 -3.5496 -1.2009 12 6 5.9186 -2.7000 -0.0009 13 6 6.5879 -4.0759 -0.0014 14 1 6.3023 -4.6346 -0.8927 15 6 8.1283 -3.9247 0.0705 16 6 8.5296 -5.2889 0.6948 17 6 7.3432 -5.5785 1.6393 18 8 6.2271 -4.8063 1.1817 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6806 0.8889 21 1 3.8745 -0.6801 -0.8911 22 1 6.2217 -2.1484 0.8890 23 1 6.2217 -2.1485 -0.8909 24 1 8.5583 -3.8061 -0.9241 25 1 8.4118 -3.0967 0.7202 26 1 9.4596 -5.1999 1.2563 27 1 8.6130 -6.0599 -0.0710 28 1 7.6016 -5.2877 2.6576 29 1 7.0957 -6.6397 1.6095 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236413705.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:37 Heat of formation + Delta-G solvation = -119.498645 kcal Electronic energy + Delta-G solvation = -12791.714122 eV Core-core repulsion = 10419.245747 eV Total energy + Delta-G solvation = -2372.468375 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.28526 -36.56648 -35.15249 -33.25282 -32.45059 -31.41438 -27.13997 -24.68400 -22.56133 -22.18032 -19.12856 -18.39073 -17.76303 -16.97339 -16.42824 -16.05666 -15.74217 -15.32808 -14.99012 -14.38690 -14.31832 -13.74251 -13.66988 -13.25870 -12.76443 -12.62984 -12.55459 -12.39705 -12.08241 -11.85080 -11.71799 -11.66483 -10.87282 -10.64887 -10.44903 -8.90170 -8.35366 -6.45517 0.79874 1.33603 1.35208 1.47916 2.11123 2.32394 2.86304 2.95253 3.13621 3.58346 3.84965 4.02247 4.14729 4.24313 4.46638 4.61784 4.67267 4.78890 4.88976 4.89792 4.96844 5.02541 5.11070 5.30298 5.46638 6.01286 6.10183 6.60915 7.19912 8.80357 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.058967 B = 0.006929 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.731800 B = 4040.120993 C = 4254.291459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.226 1.226 7 C -0.530 4.530 8 H 0.035 0.965 9 C -0.317 4.317 10 S 1.270 4.730 11 O -0.930 6.930 12 C -0.446 4.446 13 C 0.097 3.903 14 H 0.049 0.951 15 C -0.142 4.142 16 C -0.151 4.151 17 C 0.038 3.962 18 O -0.397 6.397 19 H 0.271 0.729 20 H 0.106 0.894 21 H 0.029 0.971 22 H 0.154 0.846 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.930 -5.884 6.413 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.149 1.149 7 C -0.568 4.568 8 H 0.053 0.947 9 C -0.456 4.456 10 S 1.473 4.527 11 O -0.926 6.926 12 C -0.584 4.584 13 C 0.038 3.962 14 H 0.067 0.933 15 C -0.181 4.181 16 C -0.188 4.188 17 C -0.038 4.038 18 O -0.317 6.317 19 H 0.080 0.920 20 H 0.124 0.876 21 H 0.047 0.953 22 H 0.172 0.828 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.041 -6.645 6.495 22.090 hybrid contribution 0.289 1.736 -2.339 2.928 sum 20.330 -4.908 4.156 21.322 Atomic orbital electron populations 1.70052 1.08467 1.28668 1.51214 1.26086 0.95671 1.03773 0.93222 0.85596 0.80437 0.77504 0.78837 1.20568 1.20090 1.14864 1.20603 0.89656 0.93894 1.52680 0.94721 1.25499 1.01545 1.15750 1.02809 1.69711 0.85486 0.87426 1.10054 1.92896 1.78618 1.67513 1.53581 1.27712 1.19591 1.01938 1.09191 1.22445 0.95782 0.89683 0.88266 0.93344 1.23324 0.92235 0.99305 1.03194 1.23142 0.99575 0.96668 0.99436 1.23398 0.85438 0.95935 0.99044 1.88426 1.37570 1.62405 1.43281 0.92024 0.87577 0.95259 0.82823 0.88642 0.89329 0.88453 0.87470 0.90420 0.89282 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.17 13.96 21.45 0.30 -59.87 15 2 C 0.01 0.68 5.47 84.65 0.46 1.14 15 3 Si 0.95 43.63 27.47 68.60 1.88 45.52 15 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 6 H -0.23 -8.90 6.54 99.48 0.65 -8.25 15 7 C -0.53 -31.47 9.68 25.60 0.25 -31.22 15 8 H 0.03 2.30 7.96 -2.91 -0.02 2.27 15 9 C -0.32 -14.63 4.75 71.23 0.34 -14.29 15 10 S 1.27 50.72 12.79 -56.49 -0.72 49.99 15 11 O -0.93 -50.02 18.14 -148.98 -2.70 -52.72 15 12 C -0.45 -12.43 5.68 71.98 0.41 -12.02 15 13 C 0.10 2.53 3.48 31.26 0.11 2.64 15 14 H 0.05 1.49 8.14 -2.39 -0.02 1.47 15 15 C -0.14 -2.44 6.57 32.05 0.21 -2.23 15 16 C -0.15 -2.07 7.02 31.86 0.22 -1.84 15 17 C 0.04 0.66 7.79 72.45 0.56 1.22 15 18 O -0.40 -10.37 10.72 -148.98 -1.60 -11.97 15 19 H 0.27 15.89 8.31 -92.71 -0.77 15.12 15 20 H 0.11 4.12 7.20 -2.39 -0.02 4.10 15 21 H 0.03 1.35 7.57 -2.39 -0.02 1.34 15 22 H 0.15 3.21 8.14 -2.39 -0.02 3.19 15 23 H 0.09 2.63 8.14 -2.39 -0.02 2.61 15 24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.10 1.40 8.06 -2.39 -0.02 1.38 15 26 H 0.11 0.94 8.14 -2.39 -0.02 0.92 15 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 15 28 H 0.09 1.21 8.14 -2.39 -0.02 1.20 15 29 H 0.07 1.17 8.14 -2.38 -0.02 1.15 15 Total: -1.00 -81.10 258.50 0.79 -80.31 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.06 Total: 5.35 kcal Atomic # 6 Polarization: -59.17 SS G_CDS: 2.57 Total: -56.61 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.30 Total: -59.87 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -4.30 Total: -64.69 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Atomic # 16 Polarization: 50.72 SS G_CDS: -0.72 Total: 49.99 kcal Total: -81.10 0.79 -80.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236413705.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.190 kcal (2) G-P(sol) polarization free energy of solvation -81.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds