Wall clock time and date at job start Mon Mar 30 2020 02:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39665 * 120.12410 * 59.90315 * 3 2 1 5 5 C 1.37952 * 119.95983 * 179.74604 * 4 3 2 6 6 C 1.38291 * 120.21159 * 0.53220 * 5 4 3 7 7 C 1.50703 * 119.87665 * 179.76464 * 6 5 4 8 8 H 1.09001 * 109.46992 * 144.72343 * 7 6 5 9 9 N 1.46895 * 109.46618 * 24.72387 * 7 6 5 10 10 C 1.50693 * 109.47017 * 264.72350 * 7 6 5 11 11 H 1.08005 * 120.00467 * 5.39979 * 10 7 6 12 12 C 1.37879 * 119.99963 * 185.40758 * 10 7 6 13 13 N 1.31519 * 119.99775 * 9.47874 * 12 10 7 14 14 Si 1.86796 * 120.00069 * 189.48126 * 12 10 7 15 15 H 1.48495 * 109.47221 * 84.99028 * 14 12 10 16 16 H 1.48501 * 109.47100 * 204.98757 * 14 12 10 17 17 H 1.48500 * 109.47247 * 324.98709 * 14 12 10 18 18 C 1.38827 * 120.24871 * 359.48461 * 6 5 4 19 19 O 1.35911 * 119.98138 * 180.25634 * 18 6 5 20 20 C 1.38480 * 120.03659 * 0.24115 * 18 6 5 21 21 H 1.07997 * 120.01813 * 0.04146 * 4 3 2 22 22 H 1.08000 * 119.89546 * 180.27082 * 5 4 3 23 23 H 1.00909 * 110.99542 * 173.19738 * 9 7 6 24 24 H 1.00901 * 111.00230 * 297.14903 * 9 7 6 25 25 H 0.97001 * 119.99552 * 179.97438 * 13 12 10 26 26 H 0.96698 * 113.99940 * 90.00320 * 19 18 6 27 27 H 1.07998 * 120.10199 * 180.02562 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -0.6048 -1.0452 5 6 4.6487 -0.5976 -1.0444 6 6 5.3409 -0.0021 -0.0058 7 6 6.8479 -0.0032 -0.0100 8 1 7.2132 0.9285 0.4219 9 7 7.3335 -0.1264 -1.3909 10 6 7.3515 -1.1662 0.8053 11 1 6.6542 -1.8869 1.2063 12 6 8.7026 -1.3102 1.0395 13 7 9.5329 -0.3429 0.7157 14 14 9.3539 -2.8791 1.8165 15 1 9.5725 -3.9005 0.7610 16 1 10.6392 -2.5946 2.5037 17 1 8.3678 -3.3895 2.8025 18 6 4.6528 0.6020 1.0376 19 8 5.3385 1.1903 2.0529 20 6 3.2680 0.6057 1.0445 21 1 2.7317 -1.0742 -1.8558 22 1 5.1899 -1.0623 -1.8553 23 1 8.3360 -0.0186 -1.4326 24 1 7.0470 -1.0040 -1.7981 25 1 10.4834 -0.4441 0.8809 26 1 5.5367 2.1249 1.9040 27 1 2.7316 1.0757 1.8555 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238590987.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:10 Heat of formation + Delta-G solvation = 6.042480 kcal Electronic energy + Delta-G solvation = -13826.389904 eV Core-core repulsion = 11356.214201 eV Total energy + Delta-G solvation = -2470.175703 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.56486 -36.86136 -35.81803 -34.69574 -31.84504 -29.87482 -29.39796 -26.20155 -23.98922 -22.16705 -20.61630 -19.06087 -16.76151 -16.47844 -15.82506 -15.46302 -14.50418 -14.45719 -13.86439 -13.60126 -13.25362 -12.95470 -12.78972 -12.34458 -11.96946 -11.71442 -11.45977 -11.11349 -10.95764 -10.79983 -10.22005 -10.13906 -9.58116 -8.71576 -8.46987 -8.10213 -7.40950 -6.19073 -4.29637 1.16881 1.65204 2.81483 3.19741 3.21790 3.27969 3.32897 4.07091 4.14911 4.32610 4.79995 5.05793 5.19989 5.35213 5.54954 5.84117 6.13660 6.23994 6.36599 6.52267 6.81146 6.83281 7.14585 7.50897 7.64635 7.68814 7.96366 8.19888 8.53829 8.70803 8.87253 9.37990 10.82576 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.041388 B = 0.007623 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.359812 B = 3671.986352 C = 3714.817121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.271 3.729 3 C -0.054 4.054 4 C -0.080 4.080 5 C -0.103 4.103 6 C -0.017 4.017 7 C 0.238 3.762 8 H 0.063 0.937 9 N -0.851 5.851 10 C -0.538 4.538 11 H 0.056 0.944 12 C 0.070 3.930 13 N -0.888 5.888 14 Si 0.896 3.104 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.100 3.900 19 O -0.480 6.480 20 C -0.100 4.100 21 H 0.125 0.875 22 H 0.137 0.863 23 H 0.349 0.651 24 H 0.315 0.685 25 H 0.265 0.735 26 H 0.383 0.617 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 1.675 -2.247 6.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.043 4.043 3 C -0.058 4.058 4 C -0.101 4.101 5 C -0.121 4.121 6 C -0.019 4.019 7 C 0.129 3.871 8 H 0.081 0.919 9 N -0.379 5.379 10 C -0.578 4.578 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.526 5.526 14 Si 0.723 3.277 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.055 3.945 19 O -0.289 6.289 20 C -0.121 4.121 21 H 0.143 0.857 22 H 0.154 0.846 23 H 0.162 0.838 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.238 0.762 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.761 1.842 -2.124 8.255 hybrid contribution 1.475 -1.251 0.761 2.078 sum -6.286 0.591 -1.363 6.460 Atomic orbital electron populations 1.81186 1.12224 1.09966 1.08719 1.25822 0.92714 0.92827 0.92949 1.15632 0.83734 1.07550 0.98878 1.21095 0.94495 0.97809 0.96679 1.20864 0.92353 0.99738 0.99189 1.21191 0.99380 0.91035 0.90341 1.17962 0.83728 0.98178 0.87250 0.91932 1.59582 1.19428 1.38392 1.20532 1.21584 0.92108 1.09488 1.34610 0.92544 1.24976 0.96989 0.96459 0.94917 1.69897 1.03704 1.30939 1.48094 0.86549 0.78296 0.83372 0.79484 1.20513 1.21177 1.19821 1.18062 0.88529 0.98892 0.89015 1.84937 1.75764 1.28268 1.39912 1.21271 0.93697 0.99868 0.97312 0.85697 0.84566 0.83783 0.87488 0.92499 0.76192 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.30 18.54 41.84 0.78 -6.52 15 2 C 0.27 4.06 15.33 -22.47 -0.34 3.71 15 3 C -0.05 -0.79 5.73 -106.95 -0.61 -1.41 15 4 C -0.08 -1.14 9.75 -39.15 -0.38 -1.52 15 5 C -0.10 -1.69 9.25 -39.67 -0.37 -2.05 15 6 C -0.02 -0.33 5.02 -104.38 -0.52 -0.86 15 7 C 0.24 5.34 2.52 -70.02 -0.18 5.17 15 8 H 0.06 1.56 7.62 -51.93 -0.40 1.16 15 9 N -0.85 -17.73 8.72 -6.65 -0.06 -17.78 15 10 C -0.54 -13.64 8.63 -34.44 -0.30 -13.94 15 11 H 0.06 1.48 7.76 -52.48 -0.41 1.07 15 12 C 0.07 1.80 5.32 -17.82 -0.09 1.70 15 13 N -0.89 -23.39 12.32 55.43 0.68 -22.71 15 14 Si 0.90 20.30 29.55 -169.99 -5.02 15.28 15 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 18 C 0.10 1.76 6.67 -39.27 -0.26 1.50 15 19 O -0.48 -8.41 12.62 -19.46 -0.25 -8.65 15 20 C -0.10 -1.51 9.69 -39.01 -0.38 -1.89 15 21 H 0.13 1.45 8.06 -52.49 -0.42 1.02 15 22 H 0.14 2.10 6.34 -52.49 -0.33 1.77 15 23 H 0.35 7.87 7.96 -39.29 -0.31 7.56 15 24 H 0.31 6.11 7.33 -39.29 -0.29 5.82 15 25 H 0.27 6.73 8.31 -40.82 -0.34 6.39 15 26 H 0.38 4.87 9.06 45.56 0.41 5.28 15 27 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 LS Contribution 251.47 15.07 3.79 3.79 Total: -1.00 -27.82 251.47 -4.82 -32.64 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -1.30 Total: 13.53 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.44 Total: -9.58 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 1.40 Total: -47.01 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.25 Total: -8.65 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.82 -4.82 -32.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238590987.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.684 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds