Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39658 * 120.12506 * 5.26670 * 3 2 1 5 5 C 1.37964 * 119.95665 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.21339 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.87656 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47455 * 220.00212 * 7 6 5 9 9 N 1.46905 * 109.46537 * 339.99771 * 7 6 5 10 10 C 1.50694 * 109.47295 * 99.99637 * 7 6 5 11 11 H 1.07996 * 120.00113 * 0.02562 * 10 7 6 12 12 C 1.37883 * 119.99665 * 179.97438 * 10 7 6 13 13 N 1.31508 * 120.00353 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 119.99851 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46919 * 90.00098 * 14 12 10 16 16 H 1.48493 * 109.47047 * 210.00190 * 14 12 10 17 17 H 1.48501 * 109.46931 * 330.00272 * 14 12 10 18 18 C 1.38818 * 120.24921 * 0.02562 * 6 5 4 19 19 O 1.35909 * 119.98150 * 180.02562 * 18 6 5 20 20 C 1.38475 * 120.04023 * 359.97438 * 18 6 5 21 21 H 1.08000 * 120.02178 * 359.97438 * 4 3 2 22 22 H 1.07998 * 119.88623 * 179.97438 * 5 4 3 23 23 H 1.00896 * 111.00295 * 60.00394 * 9 7 6 24 24 H 1.00904 * 110.99851 * 183.95529 * 9 7 6 25 25 H 0.96997 * 120.00416 * 179.97438 * 13 12 10 26 26 H 0.96696 * 114.00590 * 269.98285 * 19 18 6 27 27 H 1.08000 * 120.11104 * 180.27755 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.2019 -0.1109 5 6 4.6491 -1.1972 -0.1110 6 6 5.3409 -0.0048 -0.0022 7 6 6.8479 -0.0085 -0.0026 8 1 7.2133 0.7145 0.7267 9 7 7.3342 -1.3489 0.3508 10 6 7.3508 0.3630 -1.3737 11 1 6.6494 0.5806 -2.1656 12 6 8.7065 0.4263 -1.6170 13 7 9.5607 0.1619 -0.6526 14 14 9.3300 0.8875 -3.3164 15 1 9.4982 2.3607 -3.3989 16 1 10.6366 0.2256 -3.5607 17 1 8.3507 0.4430 -4.3404 18 6 4.6525 1.1956 0.1084 19 8 5.3379 2.3644 0.2146 20 6 3.2678 1.2030 0.1097 21 1 2.7323 -2.1349 -0.1964 22 1 5.1904 -2.1278 -0.1964 23 1 7.0088 -2.0377 -0.3108 24 1 8.3408 -1.3617 0.4204 25 1 10.5144 0.2060 -0.8238 26 1 5.5372 2.6223 1.1249 27 1 2.7310 2.1366 0.1912 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238618530.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = -12.429473 kcal Electronic energy + Delta-G solvation = -13840.899222 eV Core-core repulsion = 11369.922515 eV Total energy + Delta-G solvation = -2470.976707 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.87789 -38.13811 -37.20446 -36.32153 -33.59575 -31.20629 -30.73035 -28.03921 -25.53278 -23.41872 -22.18230 -20.34045 -18.56605 -17.87601 -17.31489 -16.88331 -16.22226 -15.78886 -15.25244 -14.86308 -14.70298 -14.48791 -14.15670 -13.74797 -13.46560 -13.30507 -12.84178 -12.78578 -12.59635 -12.41180 -11.90377 -11.75457 -11.16517 -10.67560 -9.73018 -9.46993 -9.13831 -8.08442 -6.30576 -0.10323 0.42351 1.39643 1.43044 1.51032 1.60973 1.97263 2.41365 2.83233 2.93898 3.10438 3.57391 4.01922 4.12819 4.22458 4.55989 4.75894 4.87843 5.05459 5.29135 5.30119 5.46927 5.69782 5.86813 5.88957 6.09903 6.44555 6.69007 6.95395 7.02272 7.15919 7.43735 8.86208 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.041647 B = 0.007727 C = 0.007456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.153149 B = 3622.593578 C = 3754.371665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.290 3.710 3 C -0.043 4.043 4 C -0.065 4.065 5 C -0.105 4.105 6 C -0.051 4.051 7 C 0.246 3.754 8 H 0.024 0.976 9 N -0.842 5.842 10 C -0.543 4.543 11 H 0.041 0.959 12 C 0.025 3.975 13 N -0.914 5.914 14 Si 0.951 3.049 15 H -0.281 1.281 16 H -0.281 1.281 17 H -0.274 1.274 18 C 0.091 3.909 19 O -0.499 6.499 20 C -0.092 4.092 21 H 0.158 0.842 22 H 0.144 0.856 23 H 0.321 0.679 24 H 0.347 0.653 25 H 0.266 0.734 26 H 0.400 0.600 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 -1.084 2.059 7.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.024 4.024 3 C -0.047 4.047 4 C -0.086 4.086 5 C -0.123 4.123 6 C -0.053 4.053 7 C 0.136 3.864 8 H 0.042 0.958 9 N -0.372 5.372 10 C -0.583 4.583 11 H 0.060 0.940 12 C -0.175 4.175 13 N -0.554 5.554 14 Si 0.778 3.222 15 H -0.207 1.207 16 H -0.207 1.207 17 H -0.199 1.199 18 C 0.046 3.954 19 O -0.310 6.310 20 C -0.113 4.113 21 H 0.176 0.824 22 H 0.161 0.839 23 H 0.132 0.868 24 H 0.161 0.839 25 H 0.076 0.924 26 H 0.257 0.743 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.148 -0.990 2.185 9.457 hybrid contribution 1.748 0.593 -1.278 2.245 sum -7.400 -0.397 0.907 7.466 Atomic orbital electron populations 1.81232 1.12841 1.08815 1.11181 1.25631 0.92348 0.92332 0.92065 1.15661 0.83516 0.94897 1.10613 1.21342 0.93499 0.97248 0.96473 1.20960 0.93367 0.98176 0.99810 1.21054 0.97535 0.93271 0.93443 1.17678 0.86288 0.89059 0.93408 0.95821 1.59571 1.18010 1.06378 1.53194 1.21869 0.91713 1.47361 0.97310 0.94028 1.25596 0.97046 0.94752 1.00076 1.69803 1.02600 1.49954 1.33084 0.85664 0.77600 0.78173 0.80785 1.20745 1.20655 1.19855 1.18162 0.89423 0.85358 1.02480 1.84869 1.76094 1.36661 1.33404 1.21377 0.92622 0.97963 0.99297 0.82396 0.83870 0.86848 0.83859 0.92417 0.74263 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.94 18.54 19.00 0.35 -13.59 15 2 C 0.29 7.74 15.33 88.33 1.35 9.10 15 3 C -0.04 -1.12 5.73 -21.38 -0.12 -1.25 15 4 C -0.07 -1.64 9.75 22.55 0.22 -1.42 15 5 C -0.10 -3.26 9.23 22.22 0.21 -3.05 15 6 C -0.05 -1.92 5.04 -19.72 -0.10 -2.02 15 7 C 0.25 11.25 2.60 43.42 0.11 11.36 15 8 H 0.02 1.22 7.84 -2.39 -0.02 1.20 15 9 N -0.84 -36.19 8.66 -174.96 -1.52 -37.71 15 10 C -0.54 -27.88 8.70 25.60 0.22 -27.66 15 11 H 0.04 2.22 7.74 -2.91 -0.02 2.19 15 12 C 0.03 1.31 5.38 84.66 0.46 1.77 15 13 N -0.91 -48.37 11.54 21.45 0.25 -48.12 15 14 Si 0.95 41.96 29.54 68.60 2.03 43.99 15 15 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 18 C 0.09 3.09 6.66 22.47 0.15 3.24 15 19 O -0.50 -17.16 12.72 -92.52 -1.18 -18.34 15 20 C -0.09 -2.53 9.69 22.64 0.22 -2.31 15 21 H 0.16 2.96 8.06 -2.91 -0.02 2.94 15 22 H 0.14 4.23 6.22 -2.91 -0.02 4.21 15 23 H 0.32 12.75 7.27 -89.70 -0.65 12.09 15 24 H 0.35 16.45 7.08 -89.69 -0.63 15.81 15 25 H 0.27 13.52 8.31 -92.71 -0.77 12.75 15 26 H 0.40 10.00 9.06 -74.06 -0.67 9.33 15 27 H 0.15 3.46 8.06 -2.91 -0.02 3.44 15 Total: -1.00 -58.35 250.07 1.94 -56.42 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.71 Total: 29.60 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 2.72 Total: -12.25 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -0.92 Total: -99.41 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.18 Total: -18.34 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -58.35 1.94 -56.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238618530.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.987 kcal (2) G-P(sol) polarization free energy of solvation -58.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds