Wall clock time and date at job start Mon Mar 30 2020 02:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35936 * 116.99930 * 2 1 4 4 C 1.36556 * 119.83893 * 359.96426 * 3 2 1 5 5 C 1.40989 * 120.53140 * 180.02562 * 4 3 2 6 6 C 1.41354 * 120.10458 * 180.29312 * 5 4 3 7 7 H 1.08008 * 119.99973 * 24.31623 * 6 5 4 8 8 C 1.39859 * 119.99990 * 204.32489 * 6 5 4 9 9 N 1.30886 * 120.00502 * 17.97156 * 8 6 5 10 10 Si 1.86808 * 119.99786 * 197.97130 * 8 6 5 11 11 H 1.48497 * 109.47100 * 89.99924 * 10 8 6 12 12 H 1.48501 * 109.47076 * 209.99960 * 10 8 6 13 13 H 1.48498 * 109.47238 * 329.99978 * 10 8 6 14 14 C 1.40488 * 119.79224 * 0.02562 * 5 4 3 15 15 C 1.38911 * 119.34310 * 0.02562 * 14 5 4 16 16 C 1.46917 * 134.20446 * 179.97438 * 15 14 5 17 17 C 1.33949 * 106.15452 * 180.02562 * 16 15 14 18 18 O 1.34423 * 110.22373 * 0.02562 * 17 16 15 19 19 C 1.34802 * 110.96698 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.46823 * 60.00204 * 1 2 3 21 21 H 1.08996 * 109.47506 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47868 * 300.00991 * 1 2 3 23 23 H 1.07995 * 119.73396 * 0.02562 * 4 3 2 24 24 H 0.96991 * 120.00377 * 180.02562 * 9 8 6 25 25 H 1.07998 * 120.33014 * 180.02562 * 14 5 4 26 26 H 1.08001 * 126.92311 * 0.05882 * 16 15 14 27 27 H 1.07991 * 124.88804 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2991 2.3544 -0.0007 5 6 1.9239 3.6182 -0.0013 6 6 1.1419 4.7958 0.0042 7 1 0.1348 4.7734 0.3938 8 6 1.6723 5.9897 -0.4950 9 7 2.7238 5.9637 -1.2739 10 14 0.8798 7.6218 -0.0500 11 1 1.5026 8.1530 1.1890 12 1 1.0812 8.5886 -1.1591 13 1 -0.5745 7.4212 0.1738 14 6 3.3262 3.7036 -0.0016 15 6 4.0793 2.5364 -0.0020 16 6 5.5196 2.2466 -0.0028 17 6 5.6312 0.9118 -0.0033 18 8 4.4129 0.3436 -0.0034 19 6 3.4437 1.2805 -0.0024 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3635 0.5140 0.8899 23 1 0.2211 2.2898 -0.0009 24 1 3.0918 6.7918 -1.6197 25 1 3.8139 4.6672 -0.0016 26 1 6.3260 2.9651 -0.0025 27 1 6.5654 0.3700 -0.0036 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258030307.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:00 Heat of formation + Delta-G solvation = -35.881370 kcal Electronic energy + Delta-G solvation = -14126.303720 eV Core-core repulsion = 11622.017311 eV Total energy + Delta-G solvation = -2504.286409 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.83078 -40.15038 -37.81176 -35.08894 -33.00085 -31.22179 -29.54989 -28.30525 -26.98156 -23.42512 -22.54991 -21.78741 -19.59285 -18.53159 -17.68226 -17.27190 -16.97521 -16.65348 -16.07533 -15.78952 -15.09237 -14.15610 -14.01211 -13.76341 -13.40578 -13.21496 -12.85927 -12.76582 -12.44643 -12.24403 -11.87082 -11.70702 -11.63859 -10.99643 -10.41326 -9.26228 -8.67937 -8.51270 -6.36938 0.48005 0.85654 1.39686 1.50667 1.53726 1.79107 2.19899 2.26926 2.54081 2.65122 3.58613 3.97843 4.27901 4.38412 4.43012 4.58484 4.71050 4.74142 4.84789 4.94976 4.97548 5.22114 5.36824 5.72182 5.83116 5.91670 6.08186 6.31114 6.44459 6.70071 6.86318 6.98172 8.30999 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.030150 B = 0.010254 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.452323 B = 2729.895456 C = 3574.570427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.343 6.343 3 C 0.153 3.847 4 C -0.276 4.276 5 C 0.098 3.902 6 C -0.490 4.490 7 H 0.085 0.915 8 C 0.034 3.966 9 N -0.821 5.821 10 Si 0.988 3.012 11 H -0.263 1.263 12 H -0.268 1.268 13 H -0.254 1.254 14 C -0.203 4.203 15 C -0.088 4.088 16 C -0.255 4.255 17 C 0.018 3.982 18 O -0.214 6.214 19 C -0.113 4.113 20 H 0.053 0.947 21 H 0.127 0.873 22 H 0.057 0.943 23 H 0.133 0.867 24 H 0.290 0.710 25 H 0.108 0.892 26 H 0.166 0.834 27 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 -4.004 1.815 4.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.258 6.258 3 C 0.108 3.892 4 C -0.296 4.296 5 C 0.095 3.905 6 C -0.519 4.519 7 H 0.103 0.897 8 C -0.181 4.181 9 N -0.446 5.446 10 Si 0.808 3.192 11 H -0.188 1.188 12 H -0.193 1.193 13 H -0.178 1.178 14 C -0.223 4.223 15 C -0.089 4.089 16 C -0.274 4.274 17 C -0.047 4.047 18 O -0.118 6.118 19 C -0.158 4.158 20 H 0.072 0.928 21 H 0.145 0.855 22 H 0.075 0.925 23 H 0.151 0.849 24 H 0.100 0.900 25 H 0.126 0.874 26 H 0.184 0.816 27 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.230 -4.337 1.659 4.649 hybrid contribution -0.333 1.103 -0.046 1.153 sum -0.103 -3.234 1.613 3.615 Atomic orbital electron populations 1.23227 0.76942 1.05089 1.01713 1.85977 1.23201 1.26950 1.89630 1.17322 0.86690 0.85036 1.00119 1.20858 0.99072 0.91065 1.18573 1.17628 0.92141 0.92465 0.88259 1.19785 1.01235 0.93482 1.37397 0.89715 1.26836 0.94893 1.04742 0.91650 1.69929 1.20926 1.31342 1.22404 0.85122 0.79674 0.75530 0.78893 1.18760 1.19269 1.17778 1.20593 0.93407 0.95380 1.12892 1.20101 0.94181 0.93003 1.01635 1.22700 0.93986 0.97068 1.13643 1.24675 0.87484 0.93039 0.99479 1.83806 1.14263 1.35634 1.78066 1.18682 0.87824 0.87201 1.22125 0.92784 0.85537 0.92453 0.84929 0.89982 0.87383 0.81647 0.73098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 9.80 113.37 1.11 1.87 15 2 O -0.34 -14.72 10.50 -92.83 -0.97 -15.69 15 3 C 0.15 7.60 6.66 22.29 0.15 7.75 15 4 C -0.28 -13.93 8.70 22.55 0.20 -13.74 15 5 C 0.10 5.44 5.57 -21.29 -0.12 5.32 15 6 C -0.49 -26.30 9.04 23.43 0.21 -26.09 15 7 H 0.08 4.28 7.91 -2.91 -0.02 4.25 15 8 C 0.03 1.73 5.13 85.23 0.44 2.17 15 9 N -0.82 -43.35 10.96 21.81 0.24 -43.11 15 10 Si 0.99 37.61 29.60 68.60 2.03 39.64 15 11 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 12 H -0.27 -9.71 7.11 99.48 0.71 -9.00 15 13 H -0.25 -9.28 7.11 99.48 0.71 -8.57 15 14 C -0.20 -11.38 8.75 22.98 0.20 -11.18 15 15 C -0.09 -4.57 6.38 -20.23 -0.13 -4.69 15 16 C -0.25 -10.41 11.15 23.57 0.26 -10.14 15 17 C 0.02 0.63 11.95 66.84 0.80 1.43 15 18 O -0.21 -9.59 10.57 -8.60 -0.09 -9.68 15 19 C -0.11 -5.77 7.37 23.30 0.17 -5.60 15 20 H 0.05 1.63 7.64 -2.39 -0.02 1.61 15 21 H 0.13 2.85 8.14 -2.39 -0.02 2.83 15 22 H 0.06 1.68 7.64 -2.39 -0.02 1.66 15 23 H 0.13 5.95 6.18 -2.91 -0.02 5.93 15 24 H 0.29 13.74 8.30 -92.71 -0.77 12.97 15 25 H 0.11 6.27 6.16 -2.91 -0.02 6.25 15 26 H 0.17 5.73 8.06 -2.91 -0.02 5.71 15 27 H 0.25 5.28 8.06 -2.92 -0.02 5.25 15 Total: -1.00 -67.59 241.54 5.69 -61.91 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 1.19 Total: 19.84 kcal Atomic # 6 Polarization: -56.20 SS G_CDS: 3.29 Total: -52.91 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.24 Total: -43.11 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -1.07 Total: -25.37 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -67.59 5.69 -61.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258030307.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.024 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds