Wall clock time and date at job start Mon Mar 30 2020 02:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 120.00210 * 2 1 4 4 H 1.48499 * 109.46909 * 269.99829 * 3 2 1 5 5 H 1.48503 * 109.46868 * 29.99716 * 3 2 1 6 6 H 1.48503 * 109.46980 * 149.99571 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 F 1.39905 * 109.47157 * 59.99756 * 10 9 7 12 12 F 1.39900 * 109.47010 * 300.00147 * 10 9 7 13 13 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 14 14 C 1.33388 * 125.20334 * 269.99821 * 13 10 9 15 15 C 1.38427 * 114.91993 * 179.97438 * 14 13 10 16 16 C 1.33387 * 114.91746 * 0.02562 * 15 14 13 17 17 S 1.75880 * 109.59703 * 359.75119 * 16 15 14 18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 20 20 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 21 21 H 1.07999 * 122.53888 * 359.95885 * 14 13 10 22 22 H 1.07997 * 122.53814 * 180.02562 * 15 14 13 23 23 H 1.08001 * 125.19635 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 9 3.0495 -3.5880 1.1428 12 9 3.0495 -3.5880 -1.1417 13 6 1.4916 -4.9672 0.0012 14 6 1.1075 -5.6328 1.0914 15 6 0.4258 -6.8121 0.8449 16 6 0.2569 -7.1044 -0.4456 17 16 0.9782 -5.8422 -1.4356 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8903 21 1 1.3130 -5.2786 2.0908 22 1 0.0586 -7.4474 1.6373 23 1 -0.2495 -7.9798 -0.8245 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259015081.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:07 Heat of formation + Delta-G solvation = -75.050581 kcal Electronic energy + Delta-G solvation = -12507.464505 eV Core-core repulsion = 9890.002933 eV Total energy + Delta-G solvation = -2617.461572 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.027 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -48.03487 -46.05372 -37.55139 -33.41519 -31.19236 -28.55049 -25.20501 -23.20982 -21.17475 -19.11644 -17.91814 -16.42273 -16.17703 -15.45943 -15.31317 -14.31627 -14.17793 -13.03504 -12.86724 -12.57529 -12.36318 -12.29572 -12.00528 -11.68667 -11.49891 -11.19331 -10.75434 -10.63059 -10.43649 -9.66428 -9.42551 -8.52371 -8.51232 -8.26573 -6.13131 -4.17015 1.10930 1.75226 2.17696 2.89624 3.29981 3.35394 3.40915 4.31186 4.44522 5.14537 5.22498 5.35595 5.45368 5.70894 5.79488 5.85733 6.27612 6.40882 6.61346 7.26347 7.33610 7.81572 8.08663 8.85439 9.47203 10.98154 Molecular weight = 218.03amu Principal moments of inertia in cm(-1) A = 0.050505 B = 0.008554 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.265553 B = 3272.496063 C = 3341.601707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.525 4.525 8 H 0.064 0.936 9 C -0.002 4.002 10 C 0.366 3.634 11 F -0.195 7.195 12 F -0.199 7.199 13 C -0.230 4.230 14 C -0.114 4.114 15 C -0.134 4.134 16 C -0.222 4.222 17 S 0.144 5.856 18 H 0.264 0.736 19 H 0.047 0.953 20 H 0.048 0.952 21 H 0.146 0.854 22 H 0.141 0.859 23 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -11.807 -0.268 11.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.563 4.563 8 H 0.082 0.918 9 C -0.040 4.040 10 C 0.328 3.672 11 F -0.176 7.176 12 F -0.180 7.180 13 C -0.348 4.348 14 C -0.145 4.145 15 C -0.165 4.165 16 C -0.358 4.358 17 S 0.408 5.592 18 H 0.074 0.926 19 H 0.065 0.935 20 H 0.067 0.933 21 H 0.163 0.837 22 H 0.158 0.842 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.158 -11.452 -1.833 11.599 hybrid contribution 0.326 0.585 1.555 1.693 sum 0.483 -10.867 -0.279 10.881 Atomic orbital electron populations 1.69958 1.06086 1.27159 1.49873 1.24951 0.94916 0.99452 0.94654 0.86433 0.79858 0.82557 0.78316 1.20396 1.21032 1.19583 1.20980 0.93417 0.89805 1.52064 0.91766 1.20127 0.93228 0.89919 1.00708 1.19487 0.83948 0.92588 0.71219 1.92943 1.75981 1.97162 1.51486 1.92947 1.76246 1.97264 1.51519 1.25477 1.09409 1.01929 0.98003 1.20069 0.99825 0.95017 0.99561 1.20113 1.02058 0.97893 0.96472 1.25741 1.08714 1.04106 0.97281 1.84277 1.52712 1.14149 1.08059 0.92629 0.93471 0.93340 0.83679 0.84171 0.81816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.56 14 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 14 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 14 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 14 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 14 7 C -0.52 -15.04 8.58 -34.44 -0.30 -15.34 14 8 H 0.06 1.85 7.74 -52.48 -0.41 1.44 14 9 C 0.00 -0.05 4.55 -27.89 -0.13 -0.18 14 10 C 0.37 8.36 1.97 -27.88 -0.05 8.30 14 11 F -0.19 -4.52 16.38 2.25 0.04 -4.49 14 12 F -0.20 -4.66 16.52 2.25 0.04 -4.62 14 13 C -0.23 -4.41 5.49 -36.00 -0.20 -4.61 14 14 C -0.11 -1.91 9.70 -41.21 -0.40 -2.31 14 15 C -0.13 -1.83 10.18 -41.21 -0.42 -2.25 14 16 C -0.22 -2.91 11.23 29.04 0.33 -2.58 14 17 S 0.14 2.31 23.06 -107.50 -2.48 -0.17 14 18 H 0.26 7.31 8.31 -40.82 -0.34 6.97 14 19 H 0.05 1.28 8.14 -51.93 -0.42 0.85 14 20 H 0.05 1.31 8.14 -51.93 -0.42 0.88 14 21 H 0.15 2.30 7.99 -52.49 -0.42 1.88 14 22 H 0.14 1.48 8.06 -52.49 -0.42 1.05 14 23 H 0.16 1.58 8.06 -52.49 -0.42 1.16 14 LS Contribution 233.69 15.07 3.52 3.52 Total: -1.00 -30.13 233.69 -6.08 -36.21 By element: Atomic # 1 Polarization: -2.70 SS G_CDS: -1.65 Total: -4.35 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -1.27 Total: -17.28 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.48 Total: -0.17 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.13 -6.08 -36.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259015081.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.837 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds