Wall clock time and date at job start Mon Mar 30 2020 02:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 120.00210 * 2 1 4 4 H 1.48499 * 109.46909 * 269.99829 * 3 2 1 5 5 H 1.48503 * 109.46868 * 29.99716 * 3 2 1 6 6 H 1.48503 * 109.46980 * 149.99571 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 F 1.39905 * 109.47157 * 59.99756 * 10 9 7 12 12 F 1.39900 * 109.47010 * 300.00147 * 10 9 7 13 13 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 14 14 C 1.33388 * 125.20334 * 269.99821 * 13 10 9 15 15 C 1.38427 * 114.91993 * 179.97438 * 14 13 10 16 16 C 1.33387 * 114.91746 * 0.02562 * 15 14 13 17 17 S 1.75880 * 109.59703 * 359.75119 * 16 15 14 18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 20 20 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 21 21 H 1.07999 * 122.53888 * 359.95885 * 14 13 10 22 22 H 1.07997 * 122.53814 * 180.02562 * 15 14 13 23 23 H 1.08001 * 125.19635 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 9 3.0495 -3.5880 1.1428 12 9 3.0495 -3.5880 -1.1417 13 6 1.4916 -4.9672 0.0012 14 6 1.1075 -5.6328 1.0914 15 6 0.4258 -6.8121 0.8449 16 6 0.2569 -7.1044 -0.4456 17 16 0.9782 -5.8422 -1.4356 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8903 21 1 1.3130 -5.2786 2.0908 22 1 0.0586 -7.4474 1.6373 23 1 -0.2495 -7.9798 -0.8245 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259015081.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:07 Heat of formation + Delta-G solvation = -92.427623 kcal Electronic energy + Delta-G solvation = -12508.218030 eV Core-core repulsion = 9890.002933 eV Total energy + Delta-G solvation = -2618.215097 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.027 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.86863 -47.89615 -38.77208 -35.53578 -32.94569 -30.23984 -26.92677 -24.82625 -22.91339 -20.43724 -19.53485 -18.32760 -17.99851 -17.39498 -16.73904 -16.18290 -15.59776 -14.85985 -14.51587 -14.30451 -13.96690 -13.69597 -13.58645 -13.48979 -13.21109 -13.19490 -12.68585 -12.36663 -11.81273 -11.67723 -11.41364 -10.70449 -9.83034 -9.49047 -8.31958 -6.44958 -0.12864 0.48610 1.00300 1.38206 1.39687 1.51568 1.72419 2.35102 2.77600 3.01404 3.55003 3.81700 3.95956 4.17077 4.48780 4.63054 5.04771 5.08679 5.20967 5.26688 5.46806 5.58599 5.91694 6.62800 7.23863 8.79690 Molecular weight = 218.03amu Principal moments of inertia in cm(-1) A = 0.050505 B = 0.008554 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.265553 B = 3272.496063 C = 3341.601707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.005 3.995 10 C 0.368 3.632 11 F -0.202 7.202 12 F -0.207 7.207 13 C -0.281 4.281 14 C -0.102 4.102 15 C -0.142 4.142 16 C -0.188 4.188 17 S 0.127 5.873 18 H 0.270 0.730 19 H 0.029 0.971 20 H 0.032 0.968 21 H 0.147 0.853 22 H 0.181 0.819 23 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 -12.968 -0.045 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.590 4.590 8 H 0.074 0.926 9 C -0.033 4.033 10 C 0.330 3.670 11 F -0.183 7.183 12 F -0.188 7.188 13 C -0.398 4.398 14 C -0.134 4.134 15 C -0.172 4.172 16 C -0.323 4.323 17 S 0.391 5.609 18 H 0.079 0.921 19 H 0.047 0.953 20 H 0.050 0.950 21 H 0.164 0.836 22 H 0.198 0.802 23 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.210 -12.624 -1.612 12.728 hybrid contribution 0.386 0.865 1.498 1.772 sum 0.176 -11.759 -0.114 11.761 Atomic orbital electron populations 1.70052 1.07511 1.28449 1.50063 1.25856 0.95866 1.03125 0.93802 0.85384 0.78590 0.77961 0.78804 1.19409 1.19795 1.19166 1.21278 0.93291 0.91497 1.52917 0.92634 1.19899 0.93531 0.91008 0.98870 1.19202 0.83169 0.93877 0.70723 1.92911 1.76177 1.97365 1.51821 1.92915 1.76462 1.97449 1.51959 1.25087 1.12418 1.01855 1.00466 1.20423 0.98383 0.95587 0.98981 1.20417 1.01755 0.97091 0.97903 1.26269 1.06223 1.03544 0.96305 1.84273 1.53393 1.15330 1.07870 0.92111 0.95284 0.95012 0.83581 0.80212 0.77440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.03 13.29 21.45 0.28 -54.75 14 2 C 0.01 0.76 5.46 84.65 0.46 1.22 14 3 Si 0.97 44.72 29.54 68.60 2.03 46.74 14 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 14 5 H -0.27 -12.01 7.11 99.48 0.71 -11.31 14 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 14 7 C -0.55 -32.52 8.58 25.60 0.22 -32.30 14 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 14 9 C 0.00 0.27 4.55 29.85 0.14 0.40 14 10 C 0.37 17.34 1.97 29.85 0.06 17.39 14 11 F -0.20 -9.63 16.38 44.97 0.74 -8.89 14 12 F -0.21 -10.01 16.52 44.97 0.74 -9.27 14 13 C -0.28 -10.78 5.49 24.59 0.13 -10.65 14 14 C -0.10 -3.27 9.70 21.22 0.21 -3.06 14 15 C -0.14 -3.36 10.18 21.22 0.22 -3.14 14 16 C -0.19 -4.17 11.23 66.72 0.75 -3.42 14 17 S 0.13 3.95 23.06 -56.49 -1.30 2.65 14 18 H 0.27 14.99 8.31 -92.71 -0.77 14.22 14 19 H 0.03 1.65 8.14 -2.39 -0.02 1.63 14 20 H 0.03 1.79 8.14 -2.39 -0.02 1.77 14 21 H 0.15 4.53 7.99 -2.91 -0.02 4.51 14 22 H 0.18 2.85 8.06 -2.91 -0.02 2.82 14 23 H 0.21 2.78 8.06 -2.91 -0.02 2.75 14 Total: -1.00 -65.93 233.69 5.89 -60.04 By element: Atomic # 1 Polarization: -4.19 SS G_CDS: 1.22 Total: -2.97 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 2.18 Total: -33.56 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.28 Total: -54.75 kcal Atomic # 9 Polarization: -19.64 SS G_CDS: 1.48 Total: -18.16 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.30 Total: 2.65 kcal Total: -65.93 5.89 -60.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259015081.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.386 kcal (2) G-P(sol) polarization free energy of solvation -65.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds