Wall clock time and date at job start Mon Mar 30 2020 02:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35281 * 126.37353 * 2 1 4 4 O 1.34216 * 109.09545 * 179.97438 * 3 2 1 5 5 C 1.34983 * 109.41247 * 359.97438 * 4 3 2 6 6 C 1.41158 * 126.13842 * 179.97438 * 5 4 3 7 7 O 1.34736 * 126.30349 * 180.02562 * 6 5 4 8 8 C 1.34283 * 110.97152 * 179.97438 * 7 6 5 9 9 C 1.34086 * 110.19839 * 0.02562 * 8 7 6 10 10 C 1.41197 * 126.30026 * 0.02562 * 6 5 4 11 11 C 1.40443 * 127.47155 * 0.05258 * 10 6 5 12 12 H 1.08001 * 120.00424 * 352.49137 * 11 10 6 13 13 C 1.39699 * 119.99906 * 172.48954 * 11 10 6 14 14 N 1.31052 * 119.99921 * 6.22093 * 13 11 10 15 15 Si 1.86800 * 119.99887 * 186.21872 * 13 11 10 16 16 H 1.48494 * 109.47271 * 94.97546 * 15 13 11 17 17 H 1.48500 * 109.47299 * 214.97925 * 15 13 11 18 18 H 1.48505 * 109.46956 * 334.97688 * 15 13 11 19 19 C 1.38533 * 107.72398 * 0.22831 * 5 4 3 20 20 H 1.09006 * 109.47058 * 90.02353 * 1 2 3 21 21 H 1.08992 * 109.47867 * 210.02675 * 1 2 3 22 22 H 1.09004 * 109.46990 * 330.03276 * 1 2 3 23 23 H 1.08007 * 125.45017 * 0.02562 * 3 2 1 24 24 H 1.07998 * 124.90223 * 179.97438 * 8 7 6 25 25 H 1.07994 * 126.81056 * 179.97438 * 9 8 7 26 26 H 0.97005 * 119.99417 * 180.02562 * 14 13 11 27 27 H 1.07999 * 126.74501 * 179.75915 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3093 1.0892 0.0000 4 8 3.5909 0.6906 0.0006 5 6 3.6411 -0.6583 0.0015 6 6 4.8113 -1.4477 0.0018 7 8 4.8654 -2.7940 0.0023 8 6 6.1375 -3.2239 0.0019 9 6 6.9790 -2.1799 0.0017 10 6 6.1407 -0.9718 0.0017 11 6 6.5695 0.3655 0.0023 12 1 5.8513 1.1630 -0.1193 13 6 7.9250 0.6644 0.1602 14 7 8.8103 -0.3015 0.1854 15 14 8.4754 2.4408 0.3353 16 1 8.5959 2.7820 1.7755 17 1 9.7924 2.6186 -0.3273 18 1 7.4755 3.3341 -0.3031 19 6 2.3382 -1.1289 -0.0037 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3634 -0.8896 0.5142 22 1 -0.3633 0.8903 0.5133 23 1 1.9724 2.1154 0.0004 24 1 6.4394 -4.2608 0.0025 25 1 8.0583 -2.2188 0.0018 26 1 9.7515 -0.0939 0.2954 27 1 2.0245 -2.1623 -0.0081 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259398848.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:07 Heat of formation + Delta-G solvation = 6.348091 kcal Electronic energy + Delta-G solvation = -14009.273602 eV Core-core repulsion = 11506.818400 eV Total energy + Delta-G solvation = -2502.455202 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.30685 -40.21389 -34.32802 -33.19149 -30.99083 -30.45787 -27.86313 -26.44153 -25.11676 -21.34680 -20.62445 -19.29462 -18.51562 -17.40345 -16.07622 -15.38892 -15.12465 -14.68779 -14.07449 -13.80697 -12.95142 -12.67523 -12.64165 -12.23279 -11.96710 -11.69724 -11.48567 -11.31894 -10.93486 -10.85211 -10.14319 -9.87847 -9.65163 -8.77107 -8.34411 -8.08001 -7.00466 -6.61907 -4.41294 2.09980 2.92212 2.96979 3.03557 3.22197 3.66950 3.77421 3.84070 4.10693 4.99521 5.22491 5.60479 5.67124 5.86669 6.01881 6.16507 6.26645 6.47691 6.65560 6.72794 6.92983 6.99967 7.16148 7.30421 7.56163 7.61805 7.90860 8.14353 8.27819 8.52500 8.59558 8.93450 9.91823 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.028951 B = 0.010305 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.933888 B = 2716.428057 C = 3665.763512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.158 4.158 3 C -0.121 4.121 4 O -0.163 6.163 5 C 0.172 3.828 6 C -0.191 4.191 7 O -0.200 6.200 8 C -0.039 4.039 9 C -0.225 4.225 10 C 0.076 3.924 11 C -0.396 4.396 12 H 0.094 0.906 13 C 0.068 3.932 14 N -0.784 5.784 15 Si 0.926 3.074 16 H -0.265 1.265 17 H -0.273 1.273 18 H -0.257 1.257 19 C -0.301 4.301 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.185 0.815 24 H 0.179 0.821 25 H 0.164 0.836 26 H 0.285 0.715 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 1.223 0.063 4.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.159 4.159 3 C -0.187 4.187 4 O -0.060 6.060 5 C 0.121 3.879 6 C -0.237 4.237 7 O -0.103 6.103 8 C -0.106 4.106 9 C -0.246 4.246 10 C 0.072 3.928 11 C -0.424 4.424 12 H 0.112 0.888 13 C -0.152 4.152 14 N -0.409 5.409 15 Si 0.750 3.250 16 H -0.190 1.190 17 H -0.198 1.198 18 H -0.180 1.180 19 C -0.321 4.321 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.202 0.798 24 H 0.196 0.804 25 H 0.182 0.818 26 H 0.096 0.904 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.805 1.222 0.077 3.997 hybrid contribution 0.412 0.582 0.106 0.721 sum -3.393 1.804 0.183 3.847 Atomic orbital electron populations 1.20074 0.90750 1.01439 1.01049 1.20013 0.95791 0.93319 1.06782 1.23351 0.80578 0.98564 1.16181 1.84108 1.28005 1.21075 1.72827 1.17541 0.91649 0.79762 0.98952 1.16869 0.91009 0.80143 1.35718 1.83575 1.27980 1.20770 1.77991 1.23627 0.82002 0.98765 1.06212 1.23419 1.01006 0.91003 1.09153 1.19542 0.88982 0.93704 0.90531 1.19232 0.92808 0.92514 1.37846 0.88824 1.26152 0.96459 1.00616 0.91924 1.69783 1.03384 1.34193 1.33573 0.85975 0.78703 0.80735 0.79607 1.19039 1.19838 1.18004 1.21401 0.91019 0.98297 1.21338 0.92339 0.92301 0.92559 0.79848 0.80403 0.81843 0.90442 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.39 36.01 0.37 -0.76 15 2 C -0.16 -3.14 6.13 -104.94 -0.64 -3.78 15 3 C -0.12 -2.44 11.99 29.68 0.36 -2.08 15 4 O -0.16 -3.98 8.91 4.04 0.04 -3.95 15 5 C 0.17 4.41 6.94 -38.37 -0.27 4.15 15 6 C -0.19 -5.19 7.07 -37.35 -0.26 -5.45 15 7 O -0.20 -5.08 10.53 4.57 0.05 -5.03 15 8 C -0.04 -0.88 11.95 29.27 0.35 -0.53 15 9 C -0.23 -5.67 9.88 -37.47 -0.37 -6.04 15 10 C 0.08 2.11 6.13 -104.37 -0.64 1.47 15 11 C -0.40 -10.68 9.03 -38.21 -0.34 -11.02 15 12 H 0.09 2.51 6.33 -52.49 -0.33 2.18 15 13 C 0.07 1.66 5.48 -17.34 -0.10 1.57 15 14 N -0.78 -19.13 10.49 55.54 0.58 -18.54 15 15 Si 0.93 18.35 29.56 -169.99 -5.03 13.32 15 16 H -0.27 -5.19 7.11 56.52 0.40 -4.78 15 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 19 C -0.30 -6.93 10.84 -38.74 -0.42 -7.35 15 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 23 H 0.18 2.89 8.06 -52.48 -0.42 2.47 15 24 H 0.18 3.06 8.06 -52.49 -0.42 2.63 15 25 H 0.16 4.05 6.10 -52.49 -0.32 3.73 15 26 H 0.28 6.21 8.30 -40.82 -0.34 5.87 15 27 H 0.13 2.85 8.06 -52.49 -0.42 2.43 15 LS Contribution 245.98 15.07 3.71 3.71 Total: -1.00 -29.27 245.98 -4.94 -34.21 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -2.32 Total: 6.11 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -1.96 Total: -29.82 kcal Atomic # 7 Polarization: -19.13 SS G_CDS: 0.58 Total: -18.54 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.27 -4.94 -34.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259398848.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.554 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds