Wall clock time and date at job start Mon Mar 30 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40191 * 126.74729 * 2 1 4 4 C 1.35280 * 107.26192 * 179.83894 * 3 2 1 5 5 O 1.34221 * 109.09152 * 0.43152 * 4 3 2 6 6 C 1.34986 * 109.41434 * 359.72972 * 5 4 3 7 7 C 1.41159 * 126.13451 * 179.97438 * 6 5 4 8 8 O 1.34745 * 126.29453 * 180.02562 * 7 6 5 9 9 C 1.34288 * 110.96250 * 179.97438 * 8 7 6 10 10 C 1.34073 * 110.20118 * 359.97438 * 9 8 7 11 11 C 1.41196 * 126.30236 * 359.73404 * 7 6 5 12 12 C 1.40437 * 127.47529 * 359.96526 * 11 7 6 13 13 H 1.08005 * 119.99619 * 0.02562 * 12 11 7 14 14 C 1.39694 * 120.00052 * 179.97438 * 12 11 7 15 15 N 1.31049 * 120.00182 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99713 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47248 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46924 * 119.99855 * 16 14 12 19 19 H 1.48499 * 109.46700 * 239.99891 * 16 14 12 20 20 H 1.09002 * 109.47152 * 269.68454 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.68554 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.68535 * 1 2 3 23 23 H 1.08003 * 126.36442 * 359.97093 * 3 2 1 24 24 H 1.07993 * 125.45404 * 180.16158 * 4 3 2 25 25 H 1.08000 * 124.89544 * 180.02562 * 9 8 7 26 26 H 1.08001 * 126.81171 * 179.97438 * 10 9 8 27 27 H 0.96998 * 120.00107 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3458 1.1233 0.0000 4 6 3.6211 0.6721 0.0036 5 8 3.6119 -0.6701 -0.0037 6 6 2.3357 -1.1100 -0.0061 7 6 1.9204 -2.4591 -0.0140 8 8 0.6477 -2.9018 -0.0170 9 6 0.6060 -4.2440 -0.0253 10 6 1.8493 -4.7459 -0.0287 11 6 2.7619 -3.5928 -0.0260 12 6 4.1661 -3.6146 -0.0333 13 1 4.7205 -2.6877 -0.0292 14 6 4.8457 -4.8350 -0.0445 15 7 4.1729 -5.9596 -0.0489 16 14 6.7135 -4.8639 -0.0534 17 1 7.2301 -3.4717 -0.0471 18 1 7.2032 -5.5795 1.1521 19 1 7.1919 -5.5634 -1.2728 20 1 -0.3633 -0.0057 1.0277 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5090 23 1 2.0320 2.1568 -0.0004 24 1 4.5051 1.2924 0.0071 25 1 -0.2986 -4.8340 -0.0295 26 1 2.1257 -5.7899 -0.0348 27 1 4.6448 -6.8071 -0.0571 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259400592.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:09 Heat of formation + Delta-G solvation = 7.154553 kcal Electronic energy + Delta-G solvation = -14221.744143 eV Core-core repulsion = 11719.323912 eV Total energy + Delta-G solvation = -2502.420231 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.31036 -40.19357 -34.32862 -33.00241 -30.99361 -30.22308 -28.06488 -26.66311 -24.72533 -21.18104 -20.50406 -19.60215 -18.46684 -17.50888 -16.00875 -15.28860 -15.13036 -14.66389 -14.02235 -13.75358 -13.00839 -12.64418 -12.29990 -12.10404 -11.88367 -11.58286 -11.49138 -11.29376 -10.95715 -10.69008 -10.07483 -9.84093 -9.66976 -8.68927 -8.45656 -8.07461 -6.99434 -6.57830 -4.39006 2.09236 2.91538 2.96850 3.05167 3.28268 3.67072 3.77710 3.83800 4.08836 4.99529 5.24355 5.74902 5.82130 6.04569 6.21186 6.37385 6.47203 6.62990 6.69407 6.80751 6.92586 7.01328 7.16694 7.31841 7.55874 7.64454 7.94443 8.14835 8.28685 8.53333 8.60469 8.94621 9.92277 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.011301 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.464655 B = 2477.144150 C = 3392.453835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.278 4.278 3 C -0.182 4.182 4 C -0.119 4.119 5 O -0.164 6.164 6 C 0.169 3.831 7 C -0.186 4.186 8 O -0.197 6.197 9 C -0.041 4.041 10 C -0.226 4.226 11 C 0.075 3.925 12 C -0.395 4.395 13 H 0.094 0.906 14 C 0.067 3.933 15 N -0.785 5.785 16 Si 0.925 3.075 17 H -0.256 1.256 18 H -0.270 1.270 19 H -0.270 1.270 20 H 0.045 0.955 21 H 0.062 0.938 22 H 0.045 0.955 23 H 0.129 0.871 24 H 0.185 0.815 25 H 0.178 0.822 26 H 0.165 0.835 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 3.128 -0.024 3.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.279 4.279 3 C -0.201 4.201 4 C -0.185 4.185 5 O -0.061 6.061 6 C 0.118 3.882 7 C -0.232 4.232 8 O -0.099 6.099 9 C -0.108 4.108 10 C -0.246 4.246 11 C 0.071 3.929 12 C -0.423 4.423 13 H 0.112 0.888 14 C -0.152 4.152 15 N -0.410 5.410 16 Si 0.749 3.251 17 H -0.179 1.179 18 H -0.195 1.195 19 H -0.195 1.195 20 H 0.064 0.936 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.147 0.853 24 H 0.202 0.798 25 H 0.195 0.805 26 H 0.182 0.818 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.695 2.896 -0.027 2.978 hybrid contribution 0.807 -0.113 0.009 0.815 sum 0.113 2.782 -0.018 2.784 Atomic orbital electron populations 1.19808 0.90521 1.00784 1.00197 1.20235 0.95966 0.91346 1.20344 1.21182 0.92913 0.98480 1.07534 1.23522 0.98686 0.81023 1.15283 1.84109 1.27575 1.21584 1.72856 1.17450 0.80655 0.90352 0.99738 1.16841 0.81694 0.89360 1.35349 1.83605 1.27524 1.20889 1.77924 1.23635 0.99232 0.81662 1.06305 1.23436 0.90917 1.01129 1.09153 1.19545 0.93375 0.89342 0.90644 1.19270 0.90685 0.93960 1.38402 0.88814 1.26150 1.02388 0.94872 0.91800 1.69776 1.38300 0.98987 1.33942 0.85951 0.80287 0.80084 0.78783 1.17896 1.19470 1.19475 0.93595 0.91942 0.93630 0.85262 0.79780 0.80482 0.81811 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.10 9.96 36.01 0.36 -0.74 15 2 C -0.28 -6.27 6.26 -103.78 -0.65 -6.92 15 3 C -0.18 -3.61 10.82 -39.90 -0.43 -4.04 15 4 C -0.12 -2.37 12.07 29.68 0.36 -2.02 15 5 O -0.16 -3.99 8.88 4.02 0.04 -3.96 15 6 C 0.17 4.30 6.94 -38.37 -0.27 4.04 15 7 C -0.19 -4.99 7.03 -37.35 -0.26 -5.25 15 8 O -0.20 -4.86 8.69 4.53 0.04 -4.82 15 9 C -0.04 -0.92 11.95 29.27 0.35 -0.57 15 10 C -0.23 -5.65 9.88 -37.48 -0.37 -6.02 15 11 C 0.08 2.06 6.14 -104.37 -0.64 1.42 15 12 C -0.40 -10.63 9.06 -38.21 -0.35 -10.98 15 13 H 0.09 2.52 6.27 -52.48 -0.33 2.19 15 14 C 0.07 1.64 5.49 -17.34 -0.10 1.55 15 15 N -0.78 -19.13 10.44 55.54 0.58 -18.55 15 16 Si 0.93 18.32 29.56 -169.99 -5.02 13.30 15 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 18 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.06 1.27 6.65 -51.93 -0.35 0.93 15 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.13 2.13 8.06 -52.48 -0.42 1.70 15 24 H 0.19 2.82 8.06 -52.49 -0.42 2.40 15 25 H 0.18 3.02 8.06 -52.49 -0.42 2.59 15 26 H 0.16 4.05 6.05 -52.49 -0.32 3.74 15 27 H 0.28 6.18 8.30 -40.82 -0.34 5.84 15 LS Contribution 242.22 15.07 3.65 3.65 Total: -1.00 -29.07 242.22 -4.96 -34.03 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -2.24 Total: 5.89 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: -2.00 Total: -29.54 kcal Atomic # 7 Polarization: -19.13 SS G_CDS: 0.58 Total: -18.55 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.78 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.07 -4.96 -34.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259400592.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.182 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds