Wall clock time and date at job start Mon Mar 30 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40191 * 126.74729 * 2 1 4 4 C 1.35280 * 107.26192 * 179.83894 * 3 2 1 5 5 O 1.34221 * 109.09152 * 0.43152 * 4 3 2 6 6 C 1.34986 * 109.41434 * 359.72972 * 5 4 3 7 7 C 1.41159 * 126.13451 * 179.97438 * 6 5 4 8 8 O 1.34745 * 126.29453 * 180.02562 * 7 6 5 9 9 C 1.34288 * 110.96250 * 179.97438 * 8 7 6 10 10 C 1.34073 * 110.20118 * 359.97438 * 9 8 7 11 11 C 1.41196 * 126.30236 * 359.73404 * 7 6 5 12 12 C 1.40437 * 127.47529 * 359.96526 * 11 7 6 13 13 H 1.08005 * 119.99619 * 0.02562 * 12 11 7 14 14 C 1.39694 * 120.00052 * 179.97438 * 12 11 7 15 15 N 1.31049 * 120.00182 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99713 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47248 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46924 * 119.99855 * 16 14 12 19 19 H 1.48499 * 109.46700 * 239.99891 * 16 14 12 20 20 H 1.09002 * 109.47152 * 269.68454 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.68554 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.68535 * 1 2 3 23 23 H 1.08003 * 126.36442 * 359.97093 * 3 2 1 24 24 H 1.07993 * 125.45404 * 180.16158 * 4 3 2 25 25 H 1.08000 * 124.89544 * 180.02562 * 9 8 7 26 26 H 1.08001 * 126.81171 * 179.97438 * 10 9 8 27 27 H 0.96998 * 120.00107 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3458 1.1233 0.0000 4 6 3.6211 0.6721 0.0036 5 8 3.6119 -0.6701 -0.0037 6 6 2.3357 -1.1100 -0.0061 7 6 1.9204 -2.4591 -0.0140 8 8 0.6477 -2.9018 -0.0170 9 6 0.6060 -4.2440 -0.0253 10 6 1.8493 -4.7459 -0.0287 11 6 2.7619 -3.5928 -0.0260 12 6 4.1661 -3.6146 -0.0333 13 1 4.7205 -2.6877 -0.0292 14 6 4.8457 -4.8350 -0.0445 15 7 4.1729 -5.9596 -0.0489 16 14 6.7135 -4.8639 -0.0534 17 1 7.2301 -3.4717 -0.0471 18 1 7.2032 -5.5795 1.1521 19 1 7.1919 -5.5634 -1.2728 20 1 -0.3633 -0.0057 1.0277 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5090 23 1 2.0320 2.1568 -0.0004 24 1 4.5051 1.2924 0.0071 25 1 -0.2986 -4.8340 -0.0295 26 1 2.1257 -5.7899 -0.0348 27 1 4.6448 -6.8071 -0.0571 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259400592.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:08 Heat of formation + Delta-G solvation = -9.891307 kcal Electronic energy + Delta-G solvation = -14222.483307 eV Core-core repulsion = 11719.323912 eV Total energy + Delta-G solvation = -2503.159395 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.06491 -42.05582 -36.17227 -34.71459 -32.85357 -31.98358 -29.77430 -28.45474 -26.52931 -22.92689 -22.28380 -21.35298 -20.28730 -19.34706 -17.83887 -16.98739 -16.94456 -16.35462 -15.89324 -15.46219 -14.68362 -14.36365 -13.87634 -13.84624 -13.55115 -13.27855 -13.10638 -13.00075 -12.70737 -12.31870 -11.83753 -11.59494 -11.51076 -10.37923 -10.25235 -9.93825 -8.78588 -8.40058 -6.31141 0.31249 1.34000 1.34156 1.50763 1.64231 1.94971 2.01076 2.14526 2.25886 3.29795 3.32347 4.15608 4.25889 4.37446 4.63328 4.77120 4.86773 4.92463 5.00439 5.05053 5.20224 5.30672 5.45812 5.52516 5.73059 5.94817 6.14005 6.29452 6.45669 6.64969 6.69868 7.05533 8.16253 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.011301 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.464655 B = 2477.144150 C = 3392.453835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.271 4.271 3 C -0.188 4.188 4 C -0.107 4.107 5 O -0.190 6.190 6 C 0.113 3.887 7 C -0.213 4.213 8 O -0.198 6.198 9 C -0.025 4.025 10 C -0.257 4.257 11 C 0.035 3.965 12 C -0.437 4.437 13 H 0.080 0.920 14 C 0.029 3.971 15 N -0.807 5.807 16 Si 0.996 3.004 17 H -0.263 1.263 18 H -0.256 1.256 19 H -0.256 1.256 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.077 0.923 23 H 0.171 0.829 24 H 0.232 0.768 25 H 0.233 0.767 26 H 0.162 0.838 27 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 4.500 -0.020 4.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.272 4.272 3 C -0.207 4.207 4 C -0.172 4.172 5 O -0.088 6.088 6 C 0.063 3.937 7 C -0.259 4.259 8 O -0.101 6.101 9 C -0.091 4.091 10 C -0.278 4.278 11 C 0.031 3.969 12 C -0.465 4.465 13 H 0.098 0.902 14 C -0.188 4.188 15 N -0.433 5.433 16 Si 0.816 3.184 17 H -0.186 1.186 18 H -0.181 1.181 19 H -0.181 1.181 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.096 0.904 23 H 0.189 0.811 24 H 0.248 0.752 25 H 0.249 0.751 26 H 0.179 0.821 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.668 4.261 -0.023 4.313 hybrid contribution 0.692 -0.336 0.011 0.769 sum 0.024 3.925 -0.012 3.925 Atomic orbital electron populations 1.19891 0.88651 1.01710 1.01064 1.20860 0.97567 0.91431 1.17379 1.21640 0.92182 0.99715 1.07132 1.24638 1.00912 0.79754 1.11903 1.84096 1.27803 1.23855 1.73032 1.17770 0.81615 0.90875 1.03464 1.17261 0.82147 0.90302 1.36190 1.83587 1.26922 1.22036 1.77506 1.24498 1.00348 0.80905 1.03398 1.23471 0.91864 1.00687 1.11746 1.20030 0.94345 0.90685 0.91823 1.19378 0.91019 0.94606 1.41512 0.90232 1.26984 1.06998 0.93878 0.90898 1.69781 1.40150 0.99584 1.33787 0.84935 0.74163 0.79725 0.79622 1.18631 1.18061 1.18067 0.92616 0.93314 0.90396 0.81124 0.75227 0.75132 0.82119 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.10 9.96 71.24 0.71 -1.39 15 2 C -0.27 -11.87 6.26 -19.32 -0.12 -12.00 15 3 C -0.19 -6.88 10.82 22.06 0.24 -6.64 15 4 C -0.11 -4.01 12.07 67.14 0.81 -3.20 15 5 O -0.19 -9.35 8.88 -8.54 -0.08 -9.43 15 6 C 0.11 5.85 6.94 23.06 0.16 6.01 15 7 C -0.21 -11.79 7.03 23.71 0.17 -11.62 15 8 O -0.20 -9.91 8.69 -6.71 -0.06 -9.97 15 9 C -0.02 -1.10 11.95 66.87 0.80 -0.30 15 10 C -0.26 -13.29 9.88 23.63 0.23 -13.06 15 11 C 0.03 2.01 6.14 -19.70 -0.12 1.89 15 12 C -0.44 -24.72 9.06 23.16 0.21 -24.51 15 13 H 0.08 4.53 6.27 -2.91 -0.02 4.51 15 14 C 0.03 1.46 5.49 85.16 0.47 1.93 15 15 N -0.81 -40.36 10.44 21.79 0.23 -40.14 15 16 Si 1.00 38.04 29.56 68.60 2.03 40.07 15 17 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 18 H -0.26 -9.15 7.11 99.48 0.71 -8.45 15 19 H -0.26 -9.15 7.11 99.48 0.71 -8.45 15 20 H 0.06 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.05 1.93 6.65 -2.39 -0.02 1.92 15 22 H 0.08 2.36 8.14 -2.38 -0.02 2.34 15 23 H 0.17 4.75 8.06 -2.91 -0.02 4.72 15 24 H 0.23 6.12 8.06 -2.91 -0.02 6.10 15 25 H 0.23 7.32 8.06 -2.91 -0.02 7.30 15 26 H 0.16 8.25 6.05 -2.91 -0.02 8.23 15 27 H 0.30 12.98 8.30 -92.71 -0.77 12.21 15 Total: -1.00 -66.32 242.22 6.86 -59.45 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 1.19 Total: 22.91 kcal Atomic # 6 Polarization: -66.45 SS G_CDS: 3.55 Total: -62.90 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.23 Total: -40.14 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.13 Total: -19.40 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -66.32 6.86 -59.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259400592.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.560 kcal (2) G-P(sol) polarization free energy of solvation -66.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds