Wall clock time and date at job start Mon Mar 30 2020 02:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86804 * 119.99782 * 2 1 4 4 H 1.48500 * 109.46870 * 269.99741 * 3 2 1 5 5 H 1.48502 * 109.47054 * 30.00198 * 3 2 1 6 6 H 1.48496 * 109.46747 * 149.99771 * 3 2 1 7 7 C 1.39887 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99776 * 197.82154 * 7 2 1 9 9 C 1.41221 * 120.00215 * 17.82236 * 7 2 1 10 10 C 1.40824 * 120.20227 * 24.64051 * 9 7 2 11 11 C 1.37646 * 119.86710 * 179.97438 * 10 9 7 12 12 F 1.35100 * 119.85190 * 180.02562 * 11 10 9 13 13 C 1.39169 * 120.28931 * 359.97375 * 11 10 9 14 14 F 1.35099 * 119.79515 * 180.02562 * 13 11 10 15 15 C 1.39142 * 120.41232 * 0.02757 * 13 11 10 16 16 O 1.36004 * 119.93957 * 179.97438 * 15 13 11 17 17 C 1.38294 * 120.11995 * 0.27079 * 15 13 11 18 18 F 1.35096 * 120.14227 * 179.72864 * 17 15 13 19 19 H 0.96999 * 119.99721 * 0.02562 * 1 2 3 20 20 H 1.08000 * 120.06456 * 0.02684 * 10 9 7 21 21 H 0.96700 * 113.99844 * 89.99940 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4402 0.7001 7 6 2.0083 -1.2115 0.0005 8 1 3.0496 -1.2338 0.2868 9 6 1.3530 -2.4053 -0.3732 10 6 0.2238 -2.3604 -1.2134 11 6 -0.4093 -3.5283 -1.5738 12 9 -1.4923 -3.4849 -2.3803 13 6 0.0621 -4.7536 -1.1120 14 9 -0.5667 -5.8938 -1.4724 15 6 1.1768 -4.8117 -0.2813 16 8 1.6289 -6.0143 0.1648 17 6 1.8222 -3.6484 0.0964 18 9 2.9013 -3.7039 0.9073 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1443 -1.4116 -1.5749 21 1 2.2838 -6.4277 -0.4142 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259439015.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:15 Heat of formation + Delta-G solvation = -188.563885 kcal Electronic energy + Delta-G solvation = -14405.460664 eV Core-core repulsion = 11216.863609 eV Total energy + Delta-G solvation = -3188.597055 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.17269 -49.40497 -49.23391 -39.77178 -37.89251 -35.40383 -31.47664 -30.13108 -27.40625 -23.84997 -23.21798 -20.31213 -18.94152 -18.75515 -18.32215 -17.70516 -17.14838 -16.89762 -16.25568 -16.00266 -15.74518 -15.36987 -15.10565 -14.92019 -14.41785 -13.75962 -13.63590 -12.99416 -12.66224 -12.44206 -12.07551 -11.97689 -11.61823 -11.14730 -9.64457 -9.42423 -8.93997 -6.68968 0.23813 0.26416 1.39392 1.44561 1.56310 2.13323 2.23930 2.84385 3.07327 3.44090 3.54675 3.89145 4.27818 4.49814 4.85411 5.02095 5.21729 5.32922 5.56651 5.75671 6.18727 6.36310 6.48388 6.75220 8.01265 Molecular weight = 218.03amu Principal moments of inertia in cm(-1) A = 0.035451 B = 0.011455 C = 0.008875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.632836 B = 2443.722086 C = 3154.200345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.037 3.963 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.447 4.447 8 H 0.097 0.903 9 C 0.085 3.915 10 C -0.181 4.181 11 C 0.095 3.905 12 F -0.146 7.146 13 C -0.099 4.099 14 F -0.149 7.149 15 C 0.114 3.886 16 O -0.492 6.492 17 C -0.057 4.057 18 F -0.146 7.146 19 H 0.305 0.695 20 H 0.143 0.857 21 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 0.711 -1.966 3.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.183 4.183 3 Si 0.816 3.184 4 H -0.178 1.178 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.473 4.473 8 H 0.115 0.885 9 C 0.081 3.919 10 C -0.201 4.201 11 C 0.075 3.925 12 F -0.124 7.124 13 C -0.121 4.121 14 F -0.128 7.128 15 C 0.067 3.933 16 O -0.304 6.304 17 C -0.078 4.078 18 F -0.125 7.125 19 H 0.116 0.884 20 H 0.161 0.839 21 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.348 0.903 -1.490 2.924 hybrid contribution 0.220 0.040 -0.380 0.441 sum 2.568 0.943 -1.870 3.314 Atomic orbital electron populations 1.69810 1.09341 1.32572 1.29838 1.27009 0.95607 1.05201 0.90508 0.84943 0.78967 0.74283 0.80197 1.17819 1.18711 1.17862 1.19965 0.99104 0.91303 1.36963 0.88531 1.17565 0.91931 0.91799 0.90622 1.20988 1.00137 0.96070 1.02933 1.17489 0.86831 0.93316 0.94856 1.91386 1.52549 1.97347 1.71160 1.17113 1.01755 0.80954 1.12270 1.91317 1.81809 1.48223 1.91441 1.17621 0.93998 0.85064 0.96581 1.84741 1.63115 1.31168 1.51347 1.17815 0.92743 0.93524 1.03686 1.91293 1.52814 1.97116 1.71272 0.88389 0.83914 0.73406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.34 10.96 21.82 0.24 -36.10 14 2 C 0.04 1.62 5.14 85.23 0.44 2.06 14 3 Si 1.00 32.70 29.60 68.60 2.03 34.73 14 4 H -0.25 -8.00 7.11 99.48 0.71 -7.29 14 5 H -0.26 -8.17 7.11 99.48 0.71 -7.46 14 6 H -0.26 -8.26 7.11 99.48 0.71 -7.55 14 7 C -0.45 -21.54 8.77 23.40 0.21 -21.34 14 8 H 0.10 4.50 7.74 -2.91 -0.02 4.48 14 9 C 0.09 4.27 5.58 -21.26 -0.12 4.15 14 10 C -0.18 -8.88 8.66 22.76 0.20 -8.69 14 11 C 0.10 4.56 7.29 22.35 0.16 4.72 14 12 F -0.15 -6.67 17.17 44.97 0.77 -5.90 14 13 C -0.10 -4.66 7.33 22.71 0.17 -4.50 14 14 F -0.15 -6.75 17.00 44.97 0.76 -5.98 14 15 C 0.11 5.20 6.70 22.50 0.15 5.35 14 16 O -0.49 -19.30 13.21 -93.60 -1.24 -20.54 14 17 C -0.06 -2.74 7.31 22.94 0.17 -2.58 14 18 F -0.15 -6.92 16.55 44.97 0.74 -6.17 14 19 H 0.30 12.28 8.30 -92.71 -0.77 11.51 14 20 H 0.14 7.04 6.16 -2.91 -0.02 7.03 14 21 H 0.41 11.26 9.06 -74.06 -0.67 10.59 14 Total: -1.00 -54.79 213.84 5.32 -49.47 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.64 Total: 11.30 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 1.37 Total: -20.82 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.24 Total: -36.10 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -1.24 Total: -20.54 kcal Atomic # 9 Polarization: -20.33 SS G_CDS: 2.28 Total: -18.05 kcal Atomic # 14 Polarization: 32.70 SS G_CDS: 2.03 Total: 34.73 kcal Total: -54.79 5.32 -49.47 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259439015.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.093 kcal (2) G-P(sol) polarization free energy of solvation -54.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds