Wall clock time and date at job start Mon Mar 30 2020 02:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36945 * 122.48511 * 2 1 4 4 C 1.39926 * 124.83025 * 359.97325 * 3 2 1 5 5 H 1.07998 * 119.99547 * 0.02562 * 4 3 2 6 6 C 1.40176 * 120.00011 * 180.02562 * 4 3 2 7 7 N 1.30760 * 119.99968 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00032 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47100 * 59.99796 * 8 6 4 10 10 H 1.48497 * 109.47361 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46777 * 300.00050 * 8 6 4 12 12 S 1.75461 * 110.34185 * 179.76283 * 3 2 1 13 13 C 1.75974 * 91.78727 * 0.27970 * 12 3 2 14 14 C 1.39655 * 130.27173 * 180.02562 * 13 12 3 15 15 C 1.37658 * 120.28481 * 179.71667 * 14 13 12 16 16 C 1.38967 * 120.23669 * 359.97438 * 15 14 13 17 17 C 1.35915 * 120.65873 * 359.97438 * 16 15 14 18 18 C 1.39792 * 122.48537 * 179.97438 * 2 1 3 19 19 H 1.08997 * 109.47342 * 270.02948 * 1 2 3 20 20 H 1.08999 * 109.47116 * 30.02996 * 1 2 3 21 21 H 1.09003 * 109.47036 * 150.02548 * 1 2 3 22 22 H 0.97006 * 119.99652 * 179.97438 * 7 6 4 23 23 H 1.07994 * 119.85271 * 359.68756 * 14 13 12 24 24 H 1.08004 * 119.88173 * 179.97438 * 15 14 13 25 25 H 1.07999 * 119.67118 * 179.97438 * 16 15 14 26 26 H 1.07990 * 119.76609 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.1552 0.0000 4 6 1.7029 2.4462 -0.0005 5 1 0.6317 2.5836 -0.0006 6 6 2.5526 3.5610 -0.0010 7 7 3.8496 3.3945 -0.0015 8 14 1.8322 5.2845 -0.0010 9 1 0.9959 5.4714 1.2117 10 1 2.9330 6.2812 -0.0022 11 1 0.9950 5.4710 -1.2133 12 16 3.9579 0.7861 0.0068 13 6 3.6415 -0.9450 0.0010 14 6 4.5275 -2.0246 0.0027 15 6 4.0489 -3.3153 0.0030 16 6 2.6799 -3.5541 0.0022 17 6 1.7963 -2.5214 0.0015 18 6 2.2578 -1.1792 0.0005 19 1 -0.3634 0.0005 1.0276 20 1 -0.3633 0.8897 -0.5143 21 1 -0.3633 -0.8902 -0.5135 22 1 4.4376 4.1661 -0.0022 23 1 5.5925 -1.8460 0.0033 24 1 4.7399 -4.1454 0.0039 25 1 2.3145 -4.5704 0.0020 26 1 0.7354 -2.7235 0.0013 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259484090.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:15 Heat of formation + Delta-G solvation = 5.080608 kcal Electronic energy + Delta-G solvation = -11917.542470 eV Core-core repulsion = 9857.785177 eV Total energy + Delta-G solvation = -2059.757293 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.17694 -35.24417 -33.41992 -29.90681 -29.08563 -27.58138 -24.79636 -21.75237 -21.13887 -18.53037 -17.48786 -16.13291 -15.52759 -14.26597 -13.95032 -13.73991 -12.87953 -12.78849 -12.62063 -11.75562 -11.64717 -11.59801 -11.49651 -11.40590 -10.78971 -10.41521 -10.24665 -9.97699 -9.69502 -9.25854 -9.02043 -8.33222 -7.35917 -7.16592 -6.30767 -4.62909 2.11495 2.48878 2.83877 2.84443 2.88503 3.31979 3.56728 3.58446 3.88408 4.67427 5.09296 5.84593 5.87060 6.11754 6.42365 6.48030 6.65483 6.71024 6.75878 6.81507 7.00577 7.18918 7.25476 7.36657 7.55874 7.62506 7.79728 7.94671 8.13644 8.38015 8.46876 9.66180 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.050358 B = 0.009743 C = 0.008200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.880893 B = 2873.237726 C = 3413.971873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.340 4.340 3 C 0.059 3.941 4 C -0.381 4.381 5 H 0.100 0.900 6 C 0.053 3.947 7 N -0.777 5.777 8 Si 0.938 3.062 9 H -0.259 1.259 10 H -0.273 1.273 11 H -0.259 1.259 12 S 0.131 5.869 13 C -0.266 4.266 14 C -0.054 4.054 15 C -0.200 4.200 16 C -0.111 4.111 17 C -0.152 4.152 18 C 0.024 3.976 19 H 0.030 0.970 20 H 0.044 0.956 21 H 0.034 0.966 22 H 0.301 0.699 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -0.641 -0.031 0.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.347 4.347 3 C -0.060 4.060 4 C -0.415 4.415 5 H 0.118 0.882 6 C -0.168 4.168 7 N -0.403 5.403 8 Si 0.760 3.240 9 H -0.183 1.183 10 H -0.197 1.197 11 H -0.183 1.183 12 S 0.393 5.607 13 C -0.380 4.380 14 C -0.076 4.076 15 C -0.221 4.221 16 C -0.131 4.131 17 C -0.172 4.172 18 C 0.016 3.984 19 H 0.049 0.951 20 H 0.063 0.937 21 H 0.053 0.947 22 H 0.114 0.886 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.810 0.388 -0.024 0.898 hybrid contribution -1.440 -0.221 0.000 1.457 sum -0.630 0.168 -0.024 0.653 Atomic orbital electron populations 1.19808 0.92455 0.99312 0.98684 1.18342 0.94908 0.90245 1.31192 1.21255 0.94284 0.95780 0.94731 1.19309 0.95701 0.88541 1.37968 0.88202 1.26322 0.94498 1.03571 0.92455 1.68652 1.04084 1.34789 1.32759 0.85821 0.79514 0.78148 0.80468 1.18330 1.19746 1.18342 1.84766 1.06510 0.90679 1.78715 1.23664 0.96876 1.01827 1.15641 1.20179 0.97028 0.91416 0.99008 1.20449 0.94976 0.95427 1.11240 1.20238 0.93553 0.97349 1.01982 1.20524 0.98006 0.91623 1.07017 1.17863 0.91714 0.92934 0.95914 0.95083 0.93659 0.94736 0.88579 0.88188 0.88039 0.88236 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.95 9.59 36.01 0.35 -0.61 15 2 C -0.34 -8.62 5.95 -104.51 -0.62 -9.24 15 3 C 0.06 1.54 6.11 -39.42 -0.24 1.30 15 4 C -0.38 -9.42 8.83 -38.22 -0.34 -9.76 15 5 H 0.10 2.32 6.67 -52.49 -0.35 1.97 15 6 C 0.05 1.21 5.50 -17.28 -0.10 1.11 15 7 N -0.78 -18.25 10.58 55.56 0.59 -17.66 15 8 Si 0.94 16.95 29.56 -169.99 -5.03 11.93 15 9 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 10 H -0.27 -4.78 7.11 56.52 0.40 -4.37 15 11 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 12 S 0.13 3.30 20.13 -107.50 -2.16 1.13 15 13 C -0.27 -6.58 6.48 -38.26 -0.25 -6.83 15 14 C -0.05 -1.19 10.07 -39.26 -0.40 -1.58 15 15 C -0.20 -4.04 10.04 -39.52 -0.40 -4.43 15 16 C -0.11 -2.23 9.94 -40.14 -0.40 -2.63 15 17 C -0.15 -3.37 9.63 -39.00 -0.38 -3.75 15 18 C 0.02 0.59 5.84 -107.11 -0.63 -0.03 15 19 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.04 0.94 6.89 -51.93 -0.36 0.58 15 21 H 0.03 0.69 7.33 -51.93 -0.38 0.31 15 22 H 0.30 6.34 8.29 -40.82 -0.34 6.00 15 23 H 0.10 1.97 8.06 -52.49 -0.42 1.55 15 24 H 0.10 1.73 8.06 -52.48 -0.42 1.30 15 25 H 0.10 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.10 2.03 7.40 -52.49 -0.39 1.64 15 LS Contribution 238.47 15.07 3.59 3.59 Total: -1.00 -26.78 238.47 -8.70 -35.48 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.30 Total: 1.97 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: -3.39 Total: -36.45 kcal Atomic # 7 Polarization: -18.25 SS G_CDS: 0.59 Total: -17.66 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.16 Total: 1.13 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -26.78 -8.70 -35.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259484090.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.560 kcal (2) G-P(sol) polarization free energy of solvation -26.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds