Wall clock time and date at job start Mon Mar 30 2020 02:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86797 * 120.00201 * 2 1 4 4 H 1.48504 * 109.47510 * 274.98979 * 3 2 1 5 5 H 1.48503 * 109.46700 * 34.98804 * 3 2 1 6 6 H 1.48497 * 109.47529 * 154.98556 * 3 2 1 7 7 C 1.40324 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00086 * 173.69819 * 7 2 1 9 9 C 1.41368 * 119.99752 * 353.96802 * 7 2 1 10 10 N 1.33607 * 118.93920 * 6.08569 * 9 7 2 11 11 C 1.31740 * 120.67718 * 180.32495 * 10 9 7 12 12 C 1.40428 * 118.69296 * 0.02562 * 11 10 9 13 13 C 1.40259 * 119.14423 * 359.55658 * 12 11 10 14 14 N 1.31889 * 118.58001 * 0.27692 * 13 12 11 15 15 C 1.50262 * 121.55720 * 180.66862 * 13 12 11 16 16 C 1.52684 * 111.14486 * 337.28601 * 15 13 12 17 17 C 1.53412 * 109.50775 * 54.49816 * 16 15 13 18 18 C 1.47063 * 120.61136 * 179.38263 * 12 11 10 19 19 O 1.21299 * 121.24032 * 348.52105 * 18 12 11 20 20 H 0.96996 * 120.00335 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.65185 * 180.02562 * 11 10 9 22 22 H 1.09004 * 109.14823 * 216.85463 * 15 13 12 23 23 H 1.09002 * 109.14464 * 97.71251 * 15 13 12 24 24 H 1.08998 * 109.46406 * 294.49281 * 16 15 13 25 25 H 1.08993 * 109.46101 * 174.50756 * 16 15 13 26 26 H 1.09000 * 109.85337 * 176.50993 * 17 16 15 27 27 H 1.08994 * 109.85539 * 55.50418 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.3815 2.1073 -1.3948 5 1 1.4935 2.6199 0.8028 6 1 3.5857 1.4120 0.5920 7 6 2.0070 -1.2152 -0.0005 8 1 3.0821 -1.2180 -0.1032 9 6 1.3060 -2.4362 0.1276 10 7 -0.0299 -2.4180 0.1242 11 6 -0.7176 -3.5349 0.2478 12 6 -0.0188 -4.7454 0.3838 13 6 1.3837 -4.7293 0.3744 14 7 2.0005 -3.5709 0.2430 15 6 2.1855 -5.9937 0.5010 16 6 1.3715 -7.0972 1.1726 17 6 0.0544 -7.2974 0.4119 18 6 -0.7440 -6.0154 0.5381 19 8 -1.9367 -6.0362 0.7579 20 1 -0.4850 0.8400 0.0004 21 1 -1.7975 -3.5198 0.2447 22 1 3.0765 -5.7940 1.0963 23 1 2.4875 -6.3264 -0.4921 24 1 1.1564 -6.8139 2.2029 25 1 1.9415 -8.0261 1.1627 26 1 -0.5034 -8.1255 0.8492 27 1 0.2610 -7.5029 -0.6383 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259652940.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:34 Heat of formation + Delta-G solvation = -31.034752 kcal Electronic energy + Delta-G solvation = -14087.052901 eV Core-core repulsion = 11615.269408 eV Total energy + Delta-G solvation = -2471.783493 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.43680 -39.53311 -36.90753 -35.55782 -33.75977 -31.89759 -29.52645 -28.42742 -24.88041 -24.17601 -22.41550 -20.64336 -19.22699 -18.26526 -17.27348 -17.00849 -16.27683 -15.66814 -15.50227 -15.02849 -14.71968 -14.59937 -14.01454 -13.61534 -13.35721 -12.93472 -12.84411 -12.53947 -12.21003 -12.04935 -11.96934 -11.53085 -11.33795 -10.99201 -10.19806 -9.97130 -9.43710 -8.62400 -6.98181 0.01796 0.93087 1.36799 1.38447 1.55664 1.77352 2.12152 2.63616 3.46735 3.60200 3.70021 3.86315 3.98335 4.16653 4.32294 4.36411 4.65776 4.78452 4.84667 4.91959 5.03235 5.07017 5.19517 5.33146 5.34349 5.63770 5.97144 6.34322 6.40534 6.82921 6.99637 8.02653 8.16420 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.053780 B = 0.008219 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.512262 B = 3406.099092 C = 3877.109107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.016 3.984 3 Si 1.009 2.991 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.250 1.250 7 C -0.394 4.394 8 H 0.105 0.895 9 C 0.351 3.649 10 N -0.547 5.547 11 C 0.191 3.809 12 C -0.441 4.441 13 C 0.233 3.767 14 N -0.616 5.616 15 C -0.068 4.068 16 C -0.097 4.097 17 C -0.150 4.150 18 C 0.412 3.588 19 O -0.536 6.536 20 H 0.292 0.708 21 H 0.139 0.861 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.056 0.944 25 H 0.123 0.877 26 H 0.105 0.895 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.911 -6.572 0.273 8.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.211 4.211 3 Si 0.826 3.174 4 H -0.179 1.179 5 H -0.186 1.186 6 H -0.173 1.173 7 C -0.427 4.427 8 H 0.123 0.877 9 C 0.120 3.880 10 N -0.265 5.265 11 C 0.014 3.986 12 C -0.451 4.451 13 C 0.077 3.923 14 N -0.337 5.337 15 C -0.106 4.106 16 C -0.135 4.135 17 C -0.188 4.188 18 C 0.297 3.703 19 O -0.419 6.419 20 H 0.104 0.896 21 H 0.156 0.844 22 H 0.110 0.890 23 H 0.123 0.877 24 H 0.075 0.925 25 H 0.142 0.858 26 H 0.124 0.876 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.684 -5.428 0.256 7.174 hybrid contribution -0.708 0.213 0.042 0.741 sum 3.976 -5.216 0.299 6.565 Atomic orbital electron populations 1.70135 1.09549 1.30831 1.24197 1.27394 0.95931 1.05372 0.92362 0.84799 0.78946 0.73676 0.79971 1.17903 1.18613 1.17302 1.20136 0.96060 0.88764 1.37710 0.87740 1.20532 0.86425 0.92180 0.88868 1.69448 1.08502 1.27681 1.20852 1.23410 0.99736 0.88584 0.86912 1.21269 0.96515 0.97208 1.30152 1.22161 0.90213 0.94848 0.85114 1.68679 1.40704 0.98890 1.25438 1.20442 0.97656 0.88833 1.03646 1.21464 0.94253 0.99387 0.98360 1.22277 0.97346 0.94803 1.04335 1.22727 0.87197 0.91180 0.69210 1.90405 1.18786 1.90503 1.42162 0.89641 0.84376 0.88997 0.87681 0.92479 0.85841 0.87639 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.86 11.42 21.88 0.25 -37.61 15 2 C 0.02 0.76 5.49 85.39 0.47 1.23 15 3 Si 1.01 35.44 29.57 68.60 2.03 37.47 15 4 H -0.25 -8.49 7.11 99.48 0.71 -7.78 15 5 H -0.26 -8.72 7.11 99.48 0.71 -8.02 15 6 H -0.25 -8.45 7.11 99.48 0.71 -7.74 15 7 C -0.39 -21.19 9.36 23.55 0.22 -20.97 15 8 H 0.10 5.26 7.86 -2.91 -0.02 5.24 15 9 C 0.35 20.08 7.35 135.02 0.99 21.07 15 10 N -0.55 -31.78 7.86 -192.94 -1.52 -33.30 15 11 C 0.19 10.12 10.90 85.24 0.93 11.05 15 12 C -0.44 -20.61 5.84 -19.94 -0.12 -20.73 15 13 C 0.23 10.34 6.70 42.90 0.29 10.62 15 14 N -0.62 -32.12 10.26 -181.55 -1.86 -33.98 15 15 C -0.07 -2.03 5.94 29.61 0.18 -1.86 15 16 C -0.10 -2.24 5.89 30.63 0.18 -2.06 15 17 C -0.15 -3.95 6.18 30.26 0.19 -3.76 15 18 C 0.41 16.48 6.89 28.27 0.19 16.67 15 19 O -0.54 -24.50 17.37 -3.09 -0.05 -24.56 15 20 H 0.29 13.41 8.29 -92.71 -0.77 12.64 15 21 H 0.14 7.04 7.82 -2.91 -0.02 7.02 15 22 H 0.09 2.61 8.14 -2.39 -0.02 2.59 15 23 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 15 25 H 0.12 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.11 2.35 8.14 -2.39 -0.02 2.33 15 27 H 0.12 2.58 8.14 -2.39 -0.02 2.56 15 Total: -1.00 -69.61 241.16 3.55 -66.05 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.19 Total: 14.66 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 3.52 Total: 11.27 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -3.13 Total: -104.90 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Total: -69.61 3.55 -66.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259652940.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.020 kcal (2) G-P(sol) polarization free energy of solvation -69.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds