Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47908 * 111.00274 * 2 1 4 4 C 1.54608 * 102.62420 * 265.48073 * 3 2 1 5 5 C 1.51581 * 102.83183 * 334.46177 * 4 3 2 6 6 C 1.37916 * 131.55703 * 196.33235 * 5 4 3 7 7 C 1.38300 * 120.07933 * 179.27723 * 6 5 4 8 8 C 1.38307 * 119.88400 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.86669 * 180.15724 * 8 7 6 10 10 C 1.50702 * 109.46938 * 90.00186 * 9 8 7 11 11 H 1.08007 * 119.99906 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00009 * 179.97438 * 10 9 8 13 13 N 1.31522 * 120.00109 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00125 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46972 * 90.00279 * 14 12 10 16 16 H 1.48497 * 109.47440 * 209.99967 * 14 12 10 17 17 H 1.48498 * 109.47327 * 330.00391 * 14 12 10 18 18 C 1.37913 * 120.26379 * 0.13495 * 8 7 6 19 19 C 1.38961 * 107.95565 * 15.94739 * 5 4 3 20 20 H 1.08998 * 109.46680 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46802 * 299.97371 * 1 2 3 22 22 H 1.09002 * 109.46810 * 59.97074 * 1 2 3 23 23 H 1.08998 * 110.77961 * 23.75750 * 3 2 1 24 24 H 1.09001 * 110.78220 * 147.19743 * 3 2 1 25 25 H 1.08998 * 110.73978 * 216.12840 * 4 3 2 26 26 H 1.08996 * 110.89615 * 92.86942 * 4 3 2 27 27 H 1.07998 * 119.96405 * 359.30073 * 6 5 4 28 28 H 1.08003 * 120.06128 * 179.97438 * 7 6 5 29 29 H 1.09001 * 109.46855 * 209.99689 * 9 8 7 30 30 H 1.08990 * 109.47587 * 329.99920 * 9 8 7 31 31 H 0.96996 * 120.00024 * 179.97438 * 13 12 10 32 32 H 1.07996 * 119.89923 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3808 0.0000 4 6 2.2313 1.6537 -1.5040 5 6 2.4298 0.2623 -2.0718 6 6 2.9580 -0.1699 -3.2703 7 6 3.0404 -1.5231 -3.5436 8 6 2.5916 -2.4427 -2.6130 9 6 2.6848 -3.9172 -2.9097 10 6 4.0089 -4.4452 -2.4210 11 1 4.7128 -3.7794 -1.9436 12 6 4.3219 -5.7781 -2.5832 13 7 5.4773 -6.2391 -2.1561 14 14 3.1043 -6.9297 -3.4081 15 1 3.3547 -6.9489 -4.8718 16 1 3.2692 -8.2999 -2.8598 17 1 1.7210 -6.4559 -3.1488 18 6 2.0595 -2.0155 -1.4145 19 6 1.9709 -0.6532 -1.1326 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5134 0.8902 22 1 -0.3633 0.5143 -0.8898 23 1 1.2670 2.0761 0.4106 24 1 2.9375 1.4349 0.5521 25 1 3.1233 2.2622 -1.6528 26 1 1.3602 2.1324 -1.9512 27 1 3.3081 0.5491 -3.9961 28 1 3.4537 -1.8613 -4.4823 29 1 1.8750 -4.4417 -2.4026 30 1 2.6043 -4.0773 -3.9848 31 1 5.6973 -7.1769 -2.2699 32 1 1.7112 -2.7387 -0.6920 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662160.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = 32.723134 kcal Electronic energy + Delta-G solvation = -14061.603115 eV Core-core repulsion = 11793.843377 eV Total energy + Delta-G solvation = -2267.759738 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.36850 -36.78635 -33.22844 -32.02302 -30.20875 -29.44975 -26.94350 -25.63451 -23.08673 -21.92729 -20.66778 -19.59115 -16.76017 -16.02837 -15.77430 -15.17423 -14.71059 -14.05084 -13.79929 -13.30701 -13.04061 -12.80136 -12.40265 -12.30870 -11.89864 -11.71294 -11.48162 -11.38003 -10.94915 -10.63341 -10.45562 -10.06993 -9.93422 -9.36153 -9.01911 -8.57092 -7.96192 -7.45244 -6.05909 -4.05079 1.88536 1.99565 3.29260 3.37114 3.39878 3.89161 4.30481 4.42438 4.78845 4.98667 5.05724 5.25863 5.30307 5.46429 5.48618 5.64192 5.69496 5.82671 5.84652 5.97373 6.09637 6.20767 6.22219 6.56436 6.77822 6.93505 6.97426 7.01071 7.18513 7.22352 7.59187 7.67020 7.77241 8.51095 8.99948 9.53988 11.07114 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.045430 B = 0.007101 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.182661 B = 3942.367085 C = 4101.141767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.496 5.496 3 C 0.050 3.950 4 C -0.104 4.104 5 C -0.168 4.168 6 C -0.091 4.091 7 C -0.130 4.130 8 C -0.014 4.014 9 C 0.015 3.985 10 C -0.513 4.513 11 H 0.074 0.926 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.878 3.122 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.265 1.265 18 C -0.108 4.108 19 C 0.080 3.920 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.029 0.971 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.264 0.736 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 13.786 0.743 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.214 5.214 3 C -0.077 4.077 4 C -0.142 4.142 5 C -0.171 4.171 6 C -0.110 4.110 7 C -0.149 4.149 8 C -0.015 4.015 9 C -0.022 4.022 10 C -0.551 4.551 11 H 0.092 0.908 12 C -0.132 4.132 13 N -0.538 5.538 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.127 4.127 19 C -0.015 4.015 20 H 0.090 0.910 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.097 0.903 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.130 0.870 28 H 0.140 0.860 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.199 13.373 1.279 16.282 hybrid contribution -0.605 -0.310 -1.048 1.249 sum -9.804 13.063 0.231 16.334 Atomic orbital electron populations 1.22441 0.86202 1.02696 1.00410 1.60191 1.08043 1.14348 1.38803 1.23129 1.00968 0.88117 0.95490 1.21557 1.01989 0.94757 0.95881 1.20721 1.06028 0.94754 0.95584 1.20269 0.99695 0.95613 0.95424 1.20996 1.01566 0.91961 1.00359 1.20063 0.91977 0.97473 0.91969 1.18812 0.98593 0.87715 0.97052 1.20934 1.00143 0.94786 1.39190 0.90760 1.24996 0.95138 0.97974 0.95133 1.69905 1.21924 1.15046 1.46940 0.86807 0.82400 0.80336 0.79984 1.20162 1.21231 1.18930 1.20380 1.02630 0.92246 0.97485 1.19438 0.99413 0.93639 0.89028 0.90980 0.91236 0.95245 0.90286 0.89513 0.90265 0.91034 0.87041 0.85952 0.95355 0.95682 0.92606 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.29 60.07 0.56 0.92 16 2 N -0.50 -7.63 5.33 -176.84 -0.94 -8.57 16 3 C 0.05 0.62 7.00 -2.42 -0.02 0.60 16 4 C -0.10 -1.31 6.97 -26.60 -0.19 -1.50 16 5 C -0.17 -2.82 6.23 -104.04 -0.65 -3.46 16 6 C -0.09 -1.56 10.03 -39.68 -0.40 -1.96 16 7 C -0.13 -2.53 9.71 -39.53 -0.38 -2.92 16 8 C -0.01 -0.31 5.06 -104.72 -0.53 -0.84 16 9 C 0.02 0.37 4.16 -29.03 -0.12 0.25 16 10 C -0.51 -14.75 9.65 -34.44 -0.33 -15.08 16 11 H 0.07 2.35 7.98 -52.48 -0.42 1.93 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 14 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 18 C -0.11 -2.19 9.71 -39.27 -0.38 -2.58 16 19 C 0.08 1.44 5.59 -83.40 -0.47 0.98 16 20 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 22 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.08 0.75 7.76 -51.93 -0.40 0.35 16 24 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.12 2.25 8.06 -52.48 -0.42 1.82 16 29 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 30 H 0.02 0.59 7.51 -51.93 -0.39 0.19 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 268.07 15.07 4.04 4.04 Total: -1.00 -31.40 268.07 -8.35 -39.75 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -4.55 Total: -1.32 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -3.00 Total: -23.66 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.17 Total: -35.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.40 -8.35 -39.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662160.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.477 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds