Wall clock time and date at job start Mon Mar 30 2020 02:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47908 * 111.00274 * 2 1 4 4 C 1.54608 * 102.62420 * 265.48073 * 3 2 1 5 5 C 1.51581 * 102.83183 * 334.46177 * 4 3 2 6 6 C 1.37916 * 131.55703 * 196.33235 * 5 4 3 7 7 C 1.38300 * 120.07933 * 179.27723 * 6 5 4 8 8 C 1.38307 * 119.88400 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.86669 * 180.15724 * 8 7 6 10 10 C 1.50702 * 109.46938 * 90.00186 * 9 8 7 11 11 H 1.08007 * 119.99906 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00009 * 179.97438 * 10 9 8 13 13 N 1.31522 * 120.00109 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00125 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46972 * 90.00279 * 14 12 10 16 16 H 1.48497 * 109.47440 * 209.99967 * 14 12 10 17 17 H 1.48498 * 109.47327 * 330.00391 * 14 12 10 18 18 C 1.37913 * 120.26379 * 0.13495 * 8 7 6 19 19 C 1.38961 * 107.95565 * 15.94739 * 5 4 3 20 20 H 1.08998 * 109.46680 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46802 * 299.97371 * 1 2 3 22 22 H 1.09002 * 109.46810 * 59.97074 * 1 2 3 23 23 H 1.08998 * 110.77961 * 23.75750 * 3 2 1 24 24 H 1.09001 * 110.78220 * 147.19743 * 3 2 1 25 25 H 1.08998 * 110.73978 * 216.12840 * 4 3 2 26 26 H 1.08996 * 110.89615 * 92.86942 * 4 3 2 27 27 H 1.07998 * 119.96405 * 359.30073 * 6 5 4 28 28 H 1.08003 * 120.06128 * 179.97438 * 7 6 5 29 29 H 1.09001 * 109.46855 * 209.99689 * 9 8 7 30 30 H 1.08990 * 109.47587 * 329.99920 * 9 8 7 31 31 H 0.96996 * 120.00024 * 179.97438 * 13 12 10 32 32 H 1.07996 * 119.89923 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3808 0.0000 4 6 2.2313 1.6537 -1.5040 5 6 2.4298 0.2623 -2.0718 6 6 2.9580 -0.1699 -3.2703 7 6 3.0404 -1.5231 -3.5436 8 6 2.5916 -2.4427 -2.6130 9 6 2.6848 -3.9172 -2.9097 10 6 4.0089 -4.4452 -2.4210 11 1 4.7128 -3.7794 -1.9436 12 6 4.3219 -5.7781 -2.5832 13 7 5.4773 -6.2391 -2.1561 14 14 3.1043 -6.9297 -3.4081 15 1 3.3547 -6.9489 -4.8718 16 1 3.2692 -8.2999 -2.8598 17 1 1.7210 -6.4559 -3.1488 18 6 2.0595 -2.0155 -1.4145 19 6 1.9709 -0.6532 -1.1326 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5134 0.8902 22 1 -0.3633 0.5143 -0.8898 23 1 1.2670 2.0761 0.4106 24 1 2.9375 1.4349 0.5521 25 1 3.1233 2.2622 -1.6528 26 1 1.3602 2.1324 -1.9512 27 1 3.3081 0.5491 -3.9961 28 1 3.4537 -1.8613 -4.4823 29 1 1.8750 -4.4417 -2.4026 30 1 2.6043 -4.0773 -3.9848 31 1 5.6973 -7.1769 -2.2699 32 1 1.7112 -2.7387 -0.6920 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662160.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:49 Heat of formation + Delta-G solvation = 12.930731 kcal Electronic energy + Delta-G solvation = -14062.461378 eV Core-core repulsion = 11793.843377 eV Total energy + Delta-G solvation = -2268.618001 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.62106 -38.18754 -35.17682 -33.57797 -31.77571 -30.76910 -28.58490 -26.73628 -24.79336 -23.40654 -21.88903 -21.09843 -18.98843 -17.29301 -17.00059 -16.47301 -16.40605 -15.73149 -15.02370 -14.85249 -14.49583 -14.09483 -14.01118 -13.64817 -13.30166 -13.11462 -12.98026 -12.74433 -12.38144 -12.07453 -12.04878 -11.83108 -11.68943 -11.44989 -10.80239 -10.28530 -9.45355 -8.76404 -8.31198 -6.36892 0.45832 0.54309 1.35405 1.37772 1.49841 2.34472 2.75299 2.85268 3.02947 3.69174 3.90942 4.11900 4.18953 4.28111 4.30194 4.52496 4.61473 4.63236 4.73363 4.76785 4.87423 4.92615 5.00523 5.06222 5.18682 5.27964 5.48161 5.55096 5.56879 5.78778 5.98796 6.04633 6.24058 6.37964 6.69123 7.26417 8.85631 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.045430 B = 0.007101 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.182661 B = 3942.367085 C = 4101.141767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.517 5.517 3 C 0.048 3.952 4 C -0.097 4.097 5 C -0.169 4.169 6 C -0.087 4.087 7 C -0.146 4.146 8 C -0.046 4.046 9 C 0.023 3.977 10 C -0.522 4.522 11 H 0.024 0.976 12 C 0.007 3.993 13 N -0.949 5.949 14 Si 0.953 3.047 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.247 1.247 18 C -0.132 4.132 19 C 0.076 3.924 20 H 0.059 0.941 21 H 0.098 0.902 22 H 0.037 0.963 23 H 0.114 0.886 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.146 0.854 28 H 0.126 0.874 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.268 0.732 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 15.850 0.193 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.235 5.235 3 C -0.078 4.078 4 C -0.134 4.134 5 C -0.172 4.172 6 C -0.106 4.106 7 C -0.164 4.164 8 C -0.047 4.047 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.043 0.957 12 C -0.190 4.190 13 N -0.590 5.590 14 Si 0.776 3.224 15 H -0.186 1.186 16 H -0.207 1.207 17 H -0.171 1.171 18 C -0.152 4.152 19 C -0.019 4.019 20 H 0.077 0.923 21 H 0.117 0.883 22 H 0.056 0.944 23 H 0.133 0.867 24 H 0.102 0.898 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.163 0.837 28 H 0.144 0.856 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.075 15.466 0.737 19.037 hybrid contribution 0.023 -0.814 -0.765 1.117 sum -11.052 14.653 -0.029 18.353 Atomic orbital electron populations 1.22504 0.84359 1.02567 1.02184 1.60164 1.09739 1.16110 1.37487 1.23310 1.01917 0.86951 0.95623 1.21655 1.03886 0.92329 0.95574 1.21313 1.04053 0.96994 0.94802 1.20595 0.98583 0.95033 0.96361 1.21128 1.01996 0.93082 1.00235 1.19923 0.94771 0.96389 0.93608 1.18641 0.95764 0.89841 0.97170 1.21147 1.01421 0.94563 1.38868 0.95729 1.26011 0.97265 0.99900 0.95788 1.70065 1.24366 1.15797 1.48727 0.85617 0.80148 0.77461 0.79220 1.18614 1.20698 1.17054 1.20342 1.04011 0.93661 0.97146 1.19611 0.98933 0.92967 0.90428 0.92252 0.88336 0.94429 0.86738 0.89779 0.88321 0.88707 0.83650 0.85632 0.95339 0.94697 0.92285 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.29 127.69 1.19 1.84 16 2 N -0.52 -14.87 5.33 -713.39 -3.80 -18.67 16 3 C 0.05 1.01 7.00 86.66 0.61 1.62 16 4 C -0.10 -2.04 6.97 30.68 0.21 -1.83 16 5 C -0.17 -5.26 6.23 -19.49 -0.12 -5.38 16 6 C -0.09 -2.82 10.03 22.21 0.22 -2.60 16 7 C -0.15 -5.68 9.71 22.30 0.22 -5.47 16 8 C -0.05 -2.06 5.06 -19.93 -0.10 -2.16 16 9 C 0.02 1.14 4.16 29.10 0.12 1.27 16 10 C -0.52 -31.44 9.65 25.60 0.25 -31.19 16 11 H 0.02 1.66 7.98 -2.91 -0.02 1.64 16 12 C 0.01 0.44 5.47 84.65 0.46 0.90 16 13 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 14 Si 0.95 44.69 27.47 68.60 1.88 46.58 16 15 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 18 C -0.13 -5.54 9.71 22.47 0.22 -5.32 16 19 C 0.08 2.70 5.59 38.28 0.21 2.91 16 20 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 22 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.11 1.60 7.76 -2.39 -0.02 1.58 16 24 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.03 1.38 7.14 -2.39 -0.02 1.37 16 30 H 0.03 1.63 7.51 -2.39 -0.02 1.62 16 31 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 32 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -71.08 268.07 2.90 -68.18 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.03 Total: 9.81 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 3.49 Total: -45.40 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -3.50 Total: -79.16 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -71.08 2.90 -68.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662160.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.109 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds