Wall clock time and date at job start Mon Mar 30 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33976 * 124.92193 * 2 1 4 4 C 1.46842 * 106.13194 * 179.97438 * 3 2 1 5 5 C 1.40530 * 105.54744 * 359.97438 * 4 3 2 6 6 C 1.39674 * 119.77407 * 179.97438 * 5 4 3 7 7 C 1.36052 * 120.59335 * 0.27504 * 6 5 4 8 8 C 1.41022 * 120.64710 * 359.52107 * 7 6 5 9 9 C 1.41106 * 120.18749 * 180.25854 * 8 7 6 10 10 H 1.08006 * 119.99894 * 150.11579 * 9 8 7 11 11 C 1.39832 * 120.00235 * 330.11678 * 9 8 7 12 12 N 1.30955 * 119.99846 * 161.77284 * 11 9 8 13 13 Si 1.86799 * 120.00053 * 341.76648 * 11 9 8 14 14 H 1.48508 * 109.46722 * 95.42160 * 13 11 9 15 15 H 1.48497 * 109.47285 * 215.41519 * 13 11 9 16 16 H 1.48496 * 109.47217 * 335.41918 * 13 11 9 17 17 C 1.39536 * 134.19163 * 180.02562 * 4 3 2 18 18 O 1.35539 * 120.45115 * 0.02562 * 17 4 3 19 19 O 1.34457 * 124.91390 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47130 * 299.99003 * 1 2 3 22 22 H 1.08996 * 109.47734 * 59.99617 * 1 2 3 23 23 H 1.07996 * 126.93107 * 0.02562 * 3 2 1 24 24 H 1.08009 * 119.70643 * 180.02562 * 6 5 4 25 25 H 1.07998 * 119.67565 * 179.72197 * 7 6 5 26 26 H 0.96997 * 119.99621 * 180.02562 * 12 11 9 27 27 H 0.96707 * 113.99278 * 90.00152 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2739 1.0985 0.0000 4 6 3.6641 0.6255 0.0006 5 6 3.5846 -0.7775 0.0016 6 6 4.7558 -1.5386 0.0018 7 6 5.9745 -0.9339 0.0068 8 6 6.0792 0.4725 0.0016 9 6 7.3482 1.0895 0.0013 10 1 7.4800 2.0532 -0.4682 11 6 8.4352 0.4532 0.6088 12 7 9.6571 0.8221 0.3159 13 14 8.1442 -0.9227 1.8382 14 1 8.2309 -2.2329 1.1444 15 1 9.1746 -0.8589 2.9056 16 1 6.7961 -0.7704 2.4418 17 6 4.9071 1.2594 0.0014 18 8 4.9883 2.6124 0.0022 19 8 2.2765 -1.1026 0.0005 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.9376 2.1248 0.0004 24 1 4.6934 -2.6169 0.0021 25 1 6.8705 -1.5368 0.0114 26 1 10.4111 0.3805 0.7371 27 1 5.0116 3.0044 0.8859 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259685748.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:59 Heat of formation + Delta-G solvation = -27.597229 kcal Electronic energy + Delta-G solvation = -14136.431783 eV Core-core repulsion = 11632.504601 eV Total energy + Delta-G solvation = -2503.927182 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.40782 -37.70751 -35.24105 -33.48305 -32.39611 -30.62013 -29.24669 -26.24283 -24.90898 -21.20148 -21.04770 -20.20305 -17.69339 -17.36513 -15.58298 -15.52192 -15.31906 -15.16052 -13.86616 -13.50525 -13.29171 -12.83498 -12.78749 -12.63776 -12.43797 -11.80818 -11.71278 -10.97930 -10.79341 -10.63472 -10.20844 -9.79081 -9.58305 -9.12638 -9.08038 -7.53524 -7.11997 -7.02457 -4.48783 1.83239 2.43950 3.01422 3.06934 3.19195 3.23880 3.55922 3.87854 4.29955 5.08964 5.12428 5.45677 5.46829 5.58545 5.78698 5.86175 5.91227 6.09686 6.26765 6.50254 6.77753 6.93290 7.12730 7.15971 7.37086 7.51597 7.70828 8.08422 8.26475 8.40691 8.68847 8.98258 9.99215 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.046487 B = 0.009581 C = 0.008358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.172709 B = 2921.601410 C = 3349.096701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.008 3.992 3 C -0.216 4.216 4 C -0.100 4.100 5 C -0.050 4.050 6 C -0.075 4.075 7 C -0.179 4.179 8 C 0.063 3.937 9 C -0.431 4.431 10 H 0.098 0.902 11 C 0.082 3.918 12 N -0.801 5.801 13 Si 0.905 3.095 14 H -0.267 1.267 15 H -0.286 1.286 16 H -0.245 1.245 17 C 0.010 3.990 18 O -0.484 6.484 19 O -0.204 6.204 20 H 0.071 0.929 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.142 0.858 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.287 0.713 27 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.915 -2.397 2.555 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.040 4.040 3 C -0.236 4.236 4 C -0.102 4.102 5 C -0.095 4.095 6 C -0.094 4.094 7 C -0.198 4.198 8 C 0.059 3.941 9 C -0.459 4.459 10 H 0.116 0.884 11 C -0.137 4.137 12 N -0.425 5.425 13 Si 0.731 3.269 14 H -0.193 1.193 15 H -0.213 1.213 16 H -0.168 1.168 17 C -0.037 4.037 18 O -0.291 6.291 19 O -0.108 6.108 20 H 0.090 0.910 21 H 0.098 0.902 22 H 0.099 0.901 23 H 0.160 0.840 24 H 0.126 0.874 25 H 0.136 0.864 26 H 0.097 0.903 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -9.691 -2.704 1.937 10.246 hybrid contribution 0.205 -0.337 1.006 1.081 sum -9.486 -3.041 2.943 10.387 Atomic orbital electron populations 1.20269 0.86072 1.03425 1.03033 1.21998 0.93341 0.84703 1.03915 1.22026 0.91471 0.98290 1.11814 1.19907 0.92979 0.93063 1.04204 1.19025 0.81910 0.92959 1.15631 1.19216 0.88422 0.97792 1.03983 1.20627 0.95373 0.94867 1.08915 1.17870 0.93194 0.90832 0.92191 1.19315 0.89893 1.06280 1.30407 0.88362 1.26199 0.94283 0.96857 0.96410 1.69744 0.99564 1.38000 1.35215 0.86425 0.79948 0.80406 0.80133 1.19283 1.21343 1.16772 1.17600 0.88942 0.82346 1.14788 1.84721 1.96006 1.17037 1.31303 1.83738 1.15747 1.33295 1.78009 0.90995 0.90152 0.90112 0.83997 0.87384 0.86435 0.90296 0.78944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.39 36.00 0.37 -0.47 15 2 C 0.01 0.15 7.23 -35.81 -0.26 -0.11 15 3 C -0.22 -4.27 11.01 -37.60 -0.41 -4.68 15 4 C -0.10 -2.36 6.33 -105.07 -0.67 -3.03 15 5 C -0.05 -1.15 7.42 -38.18 -0.28 -1.43 15 6 C -0.08 -1.69 9.98 -39.83 -0.40 -2.09 15 7 C -0.18 -4.28 7.08 -39.31 -0.28 -4.56 15 8 C 0.06 1.62 5.11 -106.64 -0.55 1.07 15 9 C -0.43 -11.67 9.18 -37.90 -0.35 -12.02 15 10 H 0.10 2.86 7.91 -52.48 -0.41 2.45 15 11 C 0.08 2.10 5.40 -17.33 -0.09 2.01 15 12 N -0.80 -20.98 13.93 55.54 0.77 -20.20 15 13 Si 0.90 19.95 24.51 -169.99 -4.17 15.78 15 14 H -0.27 -5.62 6.71 56.52 0.38 -5.24 15 15 H -0.29 -6.08 7.11 56.52 0.40 -5.68 15 16 H -0.24 -5.53 6.86 56.52 0.39 -5.15 15 17 C 0.01 0.24 6.78 -37.98 -0.26 -0.02 15 18 O -0.48 -11.22 12.87 -18.31 -0.24 -11.45 15 19 O -0.20 -4.28 10.58 3.95 0.04 -4.23 15 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.14 2.44 8.06 -52.49 -0.42 2.01 15 24 H 0.11 2.07 8.06 -52.48 -0.42 1.65 15 25 H 0.12 2.70 4.70 -52.49 -0.25 2.45 15 26 H 0.29 6.75 8.30 -40.82 -0.34 6.41 15 27 H 0.36 6.73 9.06 45.56 0.41 7.14 15 LS Contribution 238.98 15.07 3.60 3.60 Total: -1.00 -29.99 238.98 -4.69 -34.68 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -1.53 Total: 7.14 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -3.17 Total: -25.31 kcal Atomic # 7 Polarization: -20.98 SS G_CDS: 0.77 Total: -20.20 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.19 Total: -15.69 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.17 Total: 15.78 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.99 -4.69 -34.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259685748.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.078 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds