Wall clock time and date at job start Mon Mar 30 2020 02:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33976 * 124.92193 * 2 1 4 4 C 1.46842 * 106.13194 * 179.97438 * 3 2 1 5 5 C 1.40530 * 105.54744 * 359.97438 * 4 3 2 6 6 C 1.39674 * 119.77407 * 179.97438 * 5 4 3 7 7 C 1.36052 * 120.59335 * 0.27504 * 6 5 4 8 8 C 1.41022 * 120.64710 * 359.52107 * 7 6 5 9 9 C 1.41106 * 120.18749 * 180.25854 * 8 7 6 10 10 H 1.08006 * 119.99894 * 150.11579 * 9 8 7 11 11 C 1.39832 * 120.00235 * 330.11678 * 9 8 7 12 12 N 1.30955 * 119.99846 * 161.77284 * 11 9 8 13 13 Si 1.86799 * 120.00053 * 341.76648 * 11 9 8 14 14 H 1.48508 * 109.46722 * 95.42160 * 13 11 9 15 15 H 1.48497 * 109.47285 * 215.41519 * 13 11 9 16 16 H 1.48496 * 109.47217 * 335.41918 * 13 11 9 17 17 C 1.39536 * 134.19163 * 180.02562 * 4 3 2 18 18 O 1.35539 * 120.45115 * 0.02562 * 17 4 3 19 19 O 1.34457 * 124.91390 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47130 * 299.99003 * 1 2 3 22 22 H 1.08996 * 109.47734 * 59.99617 * 1 2 3 23 23 H 1.07996 * 126.93107 * 0.02562 * 3 2 1 24 24 H 1.08009 * 119.70643 * 180.02562 * 6 5 4 25 25 H 1.07998 * 119.67565 * 179.72197 * 7 6 5 26 26 H 0.96997 * 119.99621 * 180.02562 * 12 11 9 27 27 H 0.96707 * 113.99278 * 90.00152 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2739 1.0985 0.0000 4 6 3.6641 0.6255 0.0006 5 6 3.5846 -0.7775 0.0016 6 6 4.7558 -1.5386 0.0018 7 6 5.9745 -0.9339 0.0068 8 6 6.0792 0.4725 0.0016 9 6 7.3482 1.0895 0.0013 10 1 7.4800 2.0532 -0.4682 11 6 8.4352 0.4532 0.6088 12 7 9.6571 0.8221 0.3159 13 14 8.1442 -0.9227 1.8382 14 1 8.2309 -2.2329 1.1444 15 1 9.1746 -0.8589 2.9056 16 1 6.7961 -0.7704 2.4418 17 6 4.9071 1.2594 0.0014 18 8 4.9883 2.6124 0.0022 19 8 2.2765 -1.1026 0.0005 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.9376 2.1248 0.0004 24 1 4.6934 -2.6169 0.0021 25 1 6.8705 -1.5368 0.0114 26 1 10.4111 0.3805 0.7371 27 1 5.0116 3.0044 0.8859 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259685748.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:58 Heat of formation + Delta-G solvation = -48.856600 kcal Electronic energy + Delta-G solvation = -14137.353658 eV Core-core repulsion = 11632.504601 eV Total energy + Delta-G solvation = -2504.849057 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.05735 -39.52987 -37.07357 -35.37421 -33.84827 -32.28726 -30.94921 -27.80313 -26.69884 -23.02543 -22.76090 -21.81997 -19.52020 -19.16645 -17.39216 -17.27567 -16.94687 -16.79818 -15.65255 -15.26711 -15.00398 -14.49404 -14.10101 -13.83283 -13.82856 -13.55857 -13.17432 -12.71402 -12.60101 -12.34360 -11.98263 -11.63799 -11.42841 -10.94934 -10.71595 -9.38552 -8.94725 -8.79874 -6.49283 0.14434 0.60137 1.24822 1.36747 1.46501 1.58214 2.01927 2.08770 2.44108 3.21963 3.69298 3.70443 4.20708 4.27473 4.34007 4.51776 4.64530 4.73765 4.77225 5.01720 5.06267 5.25144 5.35865 5.42135 5.67256 5.75989 5.85821 6.18166 6.38592 6.54352 6.69971 7.20789 8.13999 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.046487 B = 0.009581 C = 0.008358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.172709 B = 2921.601410 C = 3349.096701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.031 3.969 3 C -0.242 4.242 4 C -0.122 4.122 5 C -0.059 4.059 6 C -0.071 4.071 7 C -0.191 4.191 8 C 0.044 3.956 9 C -0.466 4.466 10 H 0.055 0.945 11 C 0.048 3.952 12 N -0.841 5.841 13 Si 0.962 3.038 14 H -0.245 1.245 15 H -0.272 1.272 16 H -0.255 1.255 17 C -0.009 4.009 18 O -0.495 6.495 19 O -0.207 6.207 20 H 0.088 0.912 21 H 0.107 0.893 22 H 0.105 0.895 23 H 0.164 0.836 24 H 0.145 0.855 25 H 0.126 0.874 26 H 0.297 0.703 27 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.643 -4.151 3.317 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.017 4.017 3 C -0.261 4.261 4 C -0.124 4.124 5 C -0.105 4.105 6 C -0.090 4.090 7 C -0.210 4.210 8 C 0.041 3.959 9 C -0.495 4.495 10 H 0.073 0.927 11 C -0.167 4.167 12 N -0.467 5.467 13 Si 0.784 3.216 14 H -0.170 1.170 15 H -0.198 1.198 16 H -0.179 1.179 17 C -0.055 4.055 18 O -0.304 6.304 19 O -0.111 6.111 20 H 0.107 0.893 21 H 0.125 0.875 22 H 0.123 0.877 23 H 0.181 0.819 24 H 0.163 0.837 25 H 0.144 0.856 26 H 0.108 0.892 27 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -12.427 -4.451 2.694 13.472 hybrid contribution 0.775 0.276 0.712 1.088 sum -11.652 -4.175 3.406 12.837 Atomic orbital electron populations 1.20599 0.81138 1.05372 1.05474 1.23148 0.95716 0.83130 0.99745 1.22306 0.89735 1.00190 1.13915 1.20335 0.94234 0.93929 1.03890 1.19319 0.83151 0.92961 1.15085 1.19550 0.87580 0.99667 1.02166 1.20713 0.96579 0.94000 1.09676 1.18068 0.92913 0.92176 0.92734 1.19157 0.91757 1.05506 1.33075 0.92656 1.26885 0.93565 0.98938 0.97319 1.69766 1.00421 1.39818 1.36716 0.85559 0.79410 0.78442 0.78187 1.17015 1.19791 1.17886 1.17884 0.89647 0.82776 1.15201 1.84634 1.96052 1.16809 1.32936 1.83780 1.14887 1.34597 1.77826 0.89335 0.87454 0.87650 0.81863 0.83749 0.85632 0.89234 0.76991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.39 71.23 0.74 -0.53 15 2 C 0.03 0.98 7.23 24.71 0.18 1.16 15 3 C -0.24 -8.99 11.01 23.55 0.26 -8.73 15 4 C -0.12 -5.68 6.33 -20.15 -0.13 -5.80 15 5 C -0.06 -2.62 7.42 23.18 0.17 -2.45 15 6 C -0.07 -3.05 9.98 22.11 0.22 -2.83 15 7 C -0.19 -9.04 7.08 22.44 0.16 -8.88 15 8 C 0.04 2.34 5.11 -21.17 -0.11 2.24 15 9 C -0.47 -26.60 9.18 23.36 0.21 -26.38 15 10 H 0.06 3.50 7.91 -2.91 -0.02 3.48 15 11 C 0.05 2.56 5.40 85.21 0.46 3.02 15 12 N -0.84 -45.56 13.93 21.81 0.30 -45.26 15 13 Si 0.96 40.94 24.51 68.60 1.68 42.62 15 14 H -0.25 -9.54 6.71 99.48 0.67 -8.87 15 15 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 16 H -0.26 -11.19 6.86 99.48 0.68 -10.51 15 17 C -0.01 -0.45 6.78 23.30 0.16 -0.30 15 18 O -0.50 -23.75 12.87 -88.44 -1.14 -24.89 15 19 O -0.21 -8.02 10.58 -8.76 -0.09 -8.11 15 20 H 0.09 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.11 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.11 1.51 8.14 -2.39 -0.02 1.49 15 23 H 0.16 5.20 8.06 -2.91 -0.02 5.17 15 24 H 0.14 5.02 8.06 -2.91 -0.02 4.99 15 25 H 0.13 5.63 4.70 -2.91 -0.01 5.62 15 26 H 0.30 14.27 8.30 -92.71 -0.77 13.50 15 27 H 0.38 14.66 9.06 -74.05 -0.67 13.99 15 Total: -1.00 -67.07 238.98 3.55 -63.52 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.47 Total: 21.60 kcal Atomic # 6 Polarization: -51.81 SS G_CDS: 2.33 Total: -49.49 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.30 Total: -45.26 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.23 Total: -33.00 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.68 Total: 42.62 kcal Total: -67.07 3.55 -63.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259685748.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.663 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds