Wall clock time and date at job start Mon Mar 30 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30523 * 1 3 3 Si 1.86795 * 119.99913 * 2 1 4 4 H 1.48497 * 109.47290 * 274.97978 * 3 2 1 5 5 H 1.48503 * 109.47218 * 34.97963 * 3 2 1 6 6 H 1.48497 * 109.47013 * 154.97948 * 3 2 1 7 7 C 1.40436 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00046 * 185.71883 * 7 2 1 9 9 C 1.40386 * 119.99827 * 5.99407 * 7 2 1 10 10 N 1.33180 * 126.68343 * 173.69776 * 9 7 2 11 11 C 1.34275 * 105.48253 * 179.85801 * 10 9 7 12 12 C 1.48522 * 126.20125 * 180.12215 * 11 10 9 13 13 C 1.39616 * 120.17281 * 180.02562 * 12 11 10 14 14 C 1.38725 * 117.89881 * 179.78844 * 13 12 11 15 15 C 1.38675 * 118.05532 * 0.48087 * 14 13 12 16 16 N 1.32014 * 120.04573 * 359.74910 * 15 14 13 17 17 N 1.28348 * 122.29883 * 0.02562 * 16 15 14 18 18 N 1.31225 * 107.59966 * 0.40759 * 11 10 9 19 19 O 1.21259 * 110.53700 * 359.73724 * 18 11 10 20 20 H 0.97001 * 120.00341 * 359.97438 * 1 2 3 21 21 H 1.07995 * 121.05477 * 359.97438 * 13 12 11 22 22 H 1.07992 * 120.97644 * 180.23535 * 14 13 12 23 23 H 1.07997 * 119.97668 * 179.73040 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3814 2.1072 -1.3947 5 1 1.4932 2.6200 0.8027 6 1 3.5854 1.4120 0.5921 7 6 2.0074 -1.2162 0.0005 8 1 3.0833 -1.2185 0.0937 9 6 1.3112 -2.4287 -0.1259 10 7 1.8440 -3.6420 -0.2585 11 6 0.8015 -4.4844 -0.3403 12 6 0.8758 -5.9596 -0.4948 13 6 -0.2946 -6.7174 -0.5676 14 6 -0.1703 -8.0910 -0.7163 15 6 1.1070 -8.6280 -0.7732 16 7 2.1608 -7.8370 -0.6916 17 7 2.0547 -6.5649 -0.5584 18 7 -0.2949 -3.7672 -0.2652 19 8 -0.0263 -2.5911 -0.1425 20 1 -0.4851 0.8400 0.0004 21 1 -1.2660 -6.2487 -0.5129 22 1 -1.0427 -8.7242 -0.7817 23 1 1.2398 -9.6940 -0.8842 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259733233.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:24 Heat of formation + Delta-G solvation = 82.558683 kcal Electronic energy + Delta-G solvation = -13476.211226 eV Core-core repulsion = 10905.813171 eV Total energy + Delta-G solvation = -2570.398055 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.054 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.18891 -41.91703 -36.15516 -36.09284 -34.31628 -33.66863 -32.01125 -28.66679 -26.41390 -25.61080 -23.62457 -22.94090 -20.19139 -18.44425 -18.07248 -17.89069 -17.43225 -16.97250 -16.30904 -15.97011 -15.17244 -14.63273 -14.15643 -13.74079 -13.50391 -13.10410 -12.57849 -12.39168 -12.13332 -11.94899 -11.72860 -11.28555 -11.17508 -10.99183 -10.70597 -10.21444 -9.00504 -7.16471 -0.44883 -0.21828 0.93003 1.41582 1.51031 1.62290 1.92140 2.15694 2.45259 2.64289 2.97055 3.09377 3.29041 3.55525 3.74265 3.91530 4.12079 4.28779 4.73413 4.90447 5.00492 5.09291 5.26340 5.77967 5.97384 6.15408 6.38069 7.62541 7.99277 8.11155 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.082532 B = 0.006631 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.181192 B = 4221.488796 C = 4547.716949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.030 3.970 3 Si 1.024 2.976 4 H -0.255 1.255 5 H -0.255 1.255 6 H -0.249 1.249 7 C -0.426 4.426 8 H 0.123 0.877 9 C 0.270 3.730 10 N -0.617 5.617 11 C 0.198 3.802 12 C 0.137 3.863 13 C -0.103 4.103 14 C -0.085 4.085 15 C 0.044 3.956 16 N -0.275 5.275 17 N -0.251 5.251 18 N -0.460 5.460 19 O 0.028 5.972 20 H 0.309 0.691 21 H 0.162 0.838 22 H 0.214 0.786 23 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 -7.398 -1.021 8.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.193 4.193 3 Si 0.840 3.160 4 H -0.179 1.179 5 H -0.179 1.179 6 H -0.172 1.172 7 C -0.463 4.463 8 H 0.141 0.859 9 C 0.083 3.917 10 N -0.362 5.362 11 C -0.075 4.075 12 C -0.008 4.008 13 C -0.133 4.133 14 C -0.114 4.114 15 C -0.121 4.121 16 N -0.116 5.116 17 N -0.096 5.096 18 N -0.193 5.193 19 O -0.018 6.018 20 H 0.121 0.879 21 H 0.180 0.820 22 H 0.231 0.769 23 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.996 -7.707 -1.059 8.031 hybrid contribution -1.267 0.810 0.047 1.505 sum -3.264 -6.896 -1.011 7.696 Atomic orbital electron populations 1.69668 1.09656 1.33263 1.29057 1.27399 0.95982 1.05709 0.90198 0.84567 0.78740 0.72573 0.80107 1.17922 1.17869 1.17232 1.19199 0.96216 0.86063 1.44855 0.85945 1.24829 0.79751 0.95008 0.92146 1.72503 1.28478 0.99017 1.36166 1.23251 0.86703 0.94985 1.02571 1.19878 0.92991 0.89282 0.98694 1.22598 0.98930 0.95921 0.95873 1.22978 1.01183 0.93494 0.93705 1.25287 0.89466 1.04159 0.93156 1.73071 1.30966 0.97417 1.10176 1.73238 1.23147 1.04260 1.08938 1.74449 1.23566 0.91174 1.30100 1.85448 1.26361 1.18549 1.71476 0.87942 0.82010 0.76912 0.75578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.45 12.08 21.91 0.26 -39.18 14 2 C 0.03 1.41 5.50 85.42 0.47 1.88 14 3 Si 1.02 34.33 29.57 68.60 2.03 36.36 14 4 H -0.26 -8.19 7.11 99.48 0.71 -7.49 14 5 H -0.25 -7.84 7.11 99.48 0.71 -7.14 14 6 H -0.25 -8.09 7.11 99.48 0.71 -7.39 14 7 C -0.43 -22.99 9.48 23.33 0.22 -22.77 14 8 H 0.12 6.25 7.86 -2.91 -0.02 6.22 14 9 C 0.27 16.13 7.80 85.07 0.66 16.80 14 10 N -0.62 -37.12 11.62 -305.15 -3.55 -40.67 14 11 C 0.20 10.87 7.89 137.49 1.09 11.96 14 12 C 0.14 6.15 6.84 42.10 0.29 6.44 14 13 C -0.10 -3.31 9.84 22.72 0.22 -3.09 14 14 C -0.09 -1.73 10.20 22.49 0.23 -1.50 14 15 C 0.04 0.98 11.31 84.77 0.96 1.94 14 16 N -0.28 -9.84 11.50 -57.17 -0.66 -10.50 14 17 N -0.25 -11.41 11.46 -48.33 -0.55 -11.97 14 18 N -0.46 -25.66 11.88 -56.13 -0.67 -26.33 14 19 O 0.03 1.69 9.74 64.35 0.63 2.32 14 20 H 0.31 13.30 8.29 -92.71 -0.77 12.53 14 21 H 0.16 4.87 7.92 -2.91 -0.02 4.85 14 22 H 0.21 1.72 8.06 -2.91 -0.02 1.69 14 23 H 0.23 2.40 8.06 -2.91 -0.02 2.38 14 Total: -1.00 -75.55 228.20 2.89 -72.65 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.26 Total: 5.66 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 4.14 Total: 11.66 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -5.16 Total: -128.64 kcal Atomic # 8 Polarization: 1.69 SS G_CDS: 0.63 Total: 2.32 kcal Atomic # 14 Polarization: 34.33 SS G_CDS: 2.03 Total: 36.36 kcal Total: -75.55 2.89 -72.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733233.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.211 kcal (2) G-P(sol) polarization free energy of solvation -75.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds