Wall clock time and date at job start Mon Mar 30 2020 02:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34120 * 125.61306 * 2 1 4 4 C 1.35027 * 109.79192 * 180.12910 * 3 2 1 5 5 C 1.39839 * 125.89041 * 179.87990 * 4 3 2 6 6 H 1.08002 * 119.99673 * 179.68910 * 5 4 3 7 7 C 1.40033 * 120.00043 * 359.97209 * 5 4 3 8 8 N 1.30874 * 120.00164 * 359.72057 * 7 5 4 9 9 Si 1.86796 * 120.00270 * 179.72068 * 7 5 4 10 10 H 1.48504 * 109.47042 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47152 * 119.99663 * 9 7 5 12 12 H 1.48501 * 109.47172 * 240.00241 * 9 7 5 13 13 C 1.39166 * 108.21750 * 359.62376 * 4 3 2 14 14 C 1.38211 * 125.62050 * 179.70679 * 2 1 3 15 15 C 1.47854 * 126.61573 * 0.02562 * 14 2 1 16 16 C 1.35974 * 125.92900 * 129.99913 * 15 14 2 17 17 C 1.40962 * 106.74326 * 180.02562 * 16 15 14 18 18 C 1.34730 * 107.02443 * 359.97438 * 17 16 15 19 19 O 1.34359 * 108.67288 * 359.73634 * 18 17 16 20 20 H 1.09003 * 109.46925 * 270.28691 * 1 2 3 21 21 H 1.08998 * 109.47633 * 30.29400 * 1 2 3 22 22 H 1.09001 * 109.46806 * 150.29192 * 1 2 3 23 23 H 0.96995 * 120.00151 * 180.02562 * 8 7 5 24 24 H 1.08000 * 126.77099 * 180.22782 * 13 4 3 25 25 H 1.07999 * 126.63289 * 0.02562 * 16 15 14 26 26 H 1.07995 * 126.48723 * 180.02562 * 17 16 15 27 27 H 1.08004 * 125.66166 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2880 1.0904 0.0000 4 6 3.5871 0.7222 -0.0029 5 6 4.6847 1.5887 -0.0061 6 1 5.6880 1.1891 -0.0032 7 6 4.4828 2.9744 -0.0072 8 7 3.2669 3.4586 -0.0107 9 14 5.9489 4.1319 -0.0036 10 1 7.2050 3.3397 0.0007 11 1 5.9070 4.9875 -1.2166 12 1 5.9004 4.9885 1.2084 13 6 3.6453 -0.6682 0.0039 14 6 2.3119 -1.1235 0.0057 15 6 1.8608 -2.5315 0.0124 16 6 2.2917 -3.5114 -0.8261 17 6 1.6014 -4.6865 -0.4662 18 6 0.7925 -4.3691 0.5635 19 8 0.9565 -3.0676 0.8540 20 1 -0.3633 0.0051 1.0277 21 1 -0.3634 0.8873 -0.5184 22 1 -0.3633 -0.8926 -0.5093 23 1 3.1271 4.4184 -0.0118 24 1 4.5367 -1.2779 0.0071 25 1 3.0217 -3.4091 -1.6154 26 1 1.7024 -5.6576 -0.9278 27 1 0.1261 -5.0491 1.0735 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259775960.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:05 Heat of formation + Delta-G solvation = 3.923790 kcal Electronic energy + Delta-G solvation = -13901.714518 eV Core-core repulsion = 11399.154191 eV Total energy + Delta-G solvation = -2502.560328 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.89992 -40.32244 -33.77507 -32.65219 -32.01616 -30.52380 -28.54380 -27.16899 -23.53378 -21.38053 -21.15496 -19.54634 -19.10966 -17.86352 -16.04236 -15.39996 -15.24865 -14.38049 -14.35474 -13.74640 -12.94913 -12.40252 -12.33058 -12.21220 -12.05656 -12.04061 -11.36902 -11.34362 -11.06547 -10.89224 -10.46882 -10.10846 -9.51488 -9.44839 -8.70252 -7.65421 -7.05831 -6.88032 -4.45461 2.13109 2.84675 2.97655 3.02426 3.08434 3.33788 3.63674 3.84866 4.11968 4.73105 5.17069 5.31364 5.46796 5.67417 6.01397 6.28363 6.29031 6.35979 6.39646 6.52478 6.60651 6.96753 6.99911 7.05681 7.31521 7.48201 7.73262 7.93269 8.02926 8.51035 8.62933 9.15565 10.11393 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.058599 B = 0.007180 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.707028 B = 3898.833682 C = 4267.660798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.114 4.114 3 O -0.144 6.144 4 C 0.209 3.791 5 C -0.444 4.444 6 H 0.105 0.895 7 C 0.067 3.933 8 N -0.779 5.779 9 Si 0.924 3.076 10 H -0.258 1.258 11 H -0.271 1.271 12 H -0.272 1.272 13 C -0.365 4.365 14 C -0.095 4.095 15 C 0.103 3.897 16 C -0.225 4.225 17 C -0.209 4.209 18 C -0.072 4.072 19 O -0.176 6.176 20 H 0.058 0.942 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.284 0.716 24 H 0.118 0.882 25 H 0.144 0.856 26 H 0.141 0.859 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 -6.315 -0.220 6.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.164 4.164 3 O -0.040 6.040 4 C 0.156 3.844 5 C -0.474 4.474 6 H 0.123 0.877 7 C -0.154 4.154 8 N -0.406 5.406 9 Si 0.747 3.253 10 H -0.182 1.182 11 H -0.197 1.197 12 H -0.197 1.197 13 C -0.386 4.386 14 C -0.097 4.097 15 C 0.053 3.947 16 C -0.244 4.244 17 C -0.228 4.228 18 C -0.139 4.139 19 O -0.072 6.072 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.136 0.864 25 H 0.162 0.838 26 H 0.159 0.841 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.207 -5.678 0.007 6.521 hybrid contribution 0.750 0.067 -0.132 0.765 sum -2.456 -5.611 -0.125 6.127 Atomic orbital electron populations 1.19832 0.87620 1.01578 1.01248 1.22254 0.92623 0.84521 1.17020 1.84354 1.16365 1.30900 1.72376 1.19406 0.81184 0.91110 0.92667 1.18768 0.92276 0.89746 1.46624 0.87718 1.26107 0.97462 0.99461 0.92332 1.69802 1.21886 1.15233 1.33646 0.85994 0.81060 0.79544 0.78667 1.18171 1.19651 1.19664 1.21055 0.93868 0.93291 1.30361 1.17624 0.94108 0.85862 1.12058 1.20258 0.90812 0.93155 0.90471 1.21668 1.06194 0.92146 1.04358 1.21657 1.01005 0.99652 1.00536 1.23856 1.05034 0.83413 1.01594 1.84143 1.50709 1.22795 1.49546 0.92365 0.92005 0.91850 0.90529 0.86357 0.83848 0.84093 0.78859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.93 10.23 36.00 0.37 -0.56 15 2 C -0.11 -2.89 7.41 -34.32 -0.25 -3.15 15 3 O -0.14 -4.09 8.90 4.17 0.04 -4.05 15 4 C 0.21 5.87 6.77 -38.64 -0.26 5.61 15 5 C -0.44 -11.93 9.31 -38.31 -0.36 -12.28 15 6 H 0.10 2.62 7.85 -52.49 -0.41 2.21 15 7 C 0.07 1.68 5.50 -17.29 -0.10 1.59 15 8 N -0.78 -20.68 11.99 55.55 0.67 -20.01 15 9 Si 0.92 18.43 29.56 -169.99 -5.03 13.41 15 10 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 11 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 12 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 13 C -0.37 -9.65 10.91 -38.23 -0.42 -10.07 15 14 C -0.09 -2.38 6.05 -104.97 -0.64 -3.01 15 15 C 0.10 2.26 6.71 -36.46 -0.24 2.01 15 16 C -0.22 -4.33 10.85 -39.36 -0.43 -4.76 15 17 C -0.21 -3.32 10.89 -39.79 -0.43 -3.76 15 18 C -0.07 -1.11 12.08 29.49 0.36 -0.75 15 19 O -0.18 -3.48 10.67 4.56 0.05 -3.43 15 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.06 1.17 7.92 -51.93 -0.41 0.76 15 23 H 0.28 6.74 8.30 -40.82 -0.34 6.40 15 24 H 0.12 2.94 8.06 -52.49 -0.42 2.52 15 25 H 0.14 2.63 8.06 -52.49 -0.42 2.21 15 26 H 0.14 1.76 8.06 -52.49 -0.42 1.34 15 27 H 0.19 2.06 8.06 -52.48 -0.42 1.64 15 LS Contribution 251.73 15.07 3.79 3.79 Total: -1.00 -30.02 251.73 -5.37 -35.39 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -2.49 Total: 4.03 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: -2.40 Total: -29.13 kcal Atomic # 7 Polarization: -20.68 SS G_CDS: 0.67 Total: -20.01 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.09 Total: -7.48 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.02 -5.37 -35.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259775960.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.317 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds