Wall clock time and date at job start Mon Mar 30 2020 02:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47903 * 111.00140 * 2 1 4 4 C 1.54599 * 102.63190 * 149.00075 * 3 2 1 5 5 C 1.51577 * 102.98335 * 334.30826 * 4 3 2 6 6 C 1.37550 * 131.88868 * 196.14906 * 5 4 3 7 7 C 1.38308 * 120.21748 * 179.75183 * 6 5 4 8 8 C 1.38302 * 119.87991 * 0.06785 * 7 6 5 9 9 C 1.37908 * 120.26628 * 0.13036 * 8 7 6 10 10 C 1.50705 * 119.90103 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47252 * 93.47253 * 10 9 8 12 12 H 1.07993 * 120.00259 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99623 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99995 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99785 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47362 * 59.99775 * 15 13 11 17 17 H 1.48496 * 109.46884 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46908 * 299.99901 * 15 13 11 19 19 C 1.39405 * 120.19946 * 359.97438 * 9 8 7 20 20 H 1.08996 * 109.47519 * 49.91301 * 1 2 3 21 21 H 1.08998 * 109.47262 * 169.92237 * 1 2 3 22 22 H 1.09010 * 109.46700 * 289.91391 * 1 2 3 23 23 H 1.09000 * 110.77718 * 30.71237 * 3 2 1 24 24 H 1.09002 * 110.94235 * 267.35956 * 3 2 1 25 25 H 1.09001 * 110.74643 * 92.72902 * 4 3 2 26 26 H 1.09004 * 110.74575 * 215.88329 * 4 3 2 27 27 H 1.08007 * 119.82211 * 359.80515 * 6 5 4 28 28 H 1.08002 * 120.05659 * 180.09229 * 7 6 5 29 29 H 1.08000 * 119.86868 * 180.10887 * 8 7 6 30 30 H 1.09002 * 109.46859 * 213.47740 * 10 9 8 31 31 H 1.09000 * 109.46766 * 333.46912 * 10 9 8 32 32 H 0.97003 * 119.99500 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.3274 1.2330 0.7770 5 6 3.0796 0.0167 1.6469 6 6 3.7320 -0.4666 2.7572 7 6 3.2882 -1.6200 3.3782 8 6 2.1856 -2.2901 2.8802 9 6 1.5283 -1.8144 1.7651 10 6 0.3273 -2.5509 1.2297 11 6 -0.9277 -1.9607 1.8192 12 1 -0.8624 -1.1348 2.5119 13 6 -2.1595 -2.4754 1.4742 14 7 -2.2390 -3.4816 0.6311 15 14 -3.7153 -1.7434 2.2044 16 1 -3.8091 -0.3088 1.8329 17 1 -4.8985 -2.4700 1.6779 18 1 -3.6750 -1.8701 3.6834 19 6 1.9708 -0.6538 1.1321 20 1 -0.3634 0.6617 -0.7862 21 1 -0.3634 -1.0118 -0.1798 22 1 -0.3633 0.3501 0.9663 23 1 1.3196 2.0558 0.5205 24 1 2.1824 1.7277 -1.0169 25 1 4.1572 1.0556 0.0928 26 1 3.5162 2.1142 1.3901 27 1 4.5930 0.0576 3.1449 28 1 3.8015 -1.9964 4.2508 29 1 1.8381 -3.1897 3.3664 30 1 0.2979 -2.4571 0.1441 31 1 0.3961 -3.6042 1.5016 32 1 -3.1056 -3.8434 0.3881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259810676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:51 Heat of formation + Delta-G solvation = 33.461599 kcal Electronic energy + Delta-G solvation = -14618.700662 eV Core-core repulsion = 12350.972946 eV Total energy + Delta-G solvation = -2267.727716 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.11498 -36.10181 -34.07852 -31.96162 -29.83091 -28.40184 -27.41631 -24.41831 -23.21729 -21.91887 -20.63013 -19.39605 -16.36251 -15.82436 -15.41575 -15.09844 -14.69361 -14.31110 -13.08140 -12.86961 -12.71437 -12.49604 -12.25451 -11.92196 -11.60614 -11.41563 -11.30349 -10.88663 -10.84655 -10.80990 -10.41329 -9.78337 -9.52558 -9.39629 -9.08699 -8.43979 -7.84930 -6.95733 -6.05404 -4.08626 2.03873 2.16956 3.28365 3.33804 3.36410 4.25592 4.40623 4.63039 5.02223 5.06454 5.27671 5.44668 5.58911 5.68843 5.83709 5.89767 6.04365 6.13858 6.16661 6.31062 6.46178 6.49920 6.68861 6.92234 7.09874 7.12262 7.21505 7.43108 7.59222 7.65980 7.87718 7.90479 7.97522 8.30475 8.93931 9.52727 11.03016 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032628 B = 0.010257 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.939863 B = 2729.208716 C = 3179.094700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.478 5.478 3 C 0.044 3.956 4 C -0.078 4.078 5 C -0.155 4.155 6 C -0.108 4.108 7 C -0.150 4.150 8 C -0.102 4.102 9 C -0.054 4.054 10 C 0.047 3.953 11 C -0.506 4.506 12 H 0.054 0.946 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.096 3.904 20 H 0.047 0.953 21 H 0.120 0.880 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.036 0.964 31 H 0.027 0.973 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.246 7.354 1.075 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.192 5.192 3 C -0.083 4.083 4 C -0.116 4.116 5 C -0.158 4.158 6 C -0.127 4.127 7 C -0.169 4.169 8 C -0.121 4.121 9 C -0.057 4.057 10 C 0.010 3.990 11 C -0.545 4.545 12 H 0.072 0.928 13 C -0.142 4.142 14 N -0.530 5.530 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.002 4.002 20 H 0.066 0.934 21 H 0.138 0.862 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.199 7.024 0.437 10.805 hybrid contribution -1.162 0.727 1.026 1.712 sum 7.036 7.751 1.463 10.570 Atomic orbital electron populations 1.23144 0.83834 1.06399 1.00093 1.60494 1.10695 1.12645 1.35412 1.23215 0.95057 0.89523 1.00507 1.21184 0.97721 0.95773 0.96888 1.20432 0.99218 0.98574 0.97596 1.19976 0.99914 0.97076 0.95715 1.20848 0.98567 0.96648 1.00827 1.20823 0.95165 1.00052 0.96032 1.20088 0.97359 0.94032 0.94176 1.18458 0.88723 0.94959 0.96832 1.20984 0.90025 1.16839 1.26602 0.92803 1.24963 0.98901 0.95055 0.95241 1.69947 1.24950 1.24514 1.33546 0.86694 0.82724 0.79268 0.79621 1.20214 1.21216 1.20233 1.19614 0.95461 0.95476 0.89621 0.93421 0.86205 0.93846 0.92893 0.89635 0.90344 0.91082 0.87440 0.86910 0.86224 0.94568 0.95487 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 7.73 60.06 0.46 0.68 16 2 N -0.48 -9.51 5.30 -176.70 -0.94 -10.45 16 3 C 0.04 0.68 6.88 -2.43 -0.02 0.66 16 4 C -0.08 -1.15 7.02 -26.61 -0.19 -1.34 16 5 C -0.16 -2.84 6.25 -104.00 -0.65 -3.49 16 6 C -0.11 -1.83 10.01 -39.81 -0.40 -2.23 16 7 C -0.15 -2.61 10.06 -39.53 -0.40 -3.00 16 8 C -0.10 -2.06 9.65 -39.68 -0.38 -2.44 16 9 C -0.05 -1.22 5.06 -104.31 -0.53 -1.75 16 10 C 0.05 1.20 4.34 -29.03 -0.13 1.07 16 11 C -0.51 -13.59 6.15 -34.44 -0.21 -13.80 16 12 H 0.05 1.46 7.40 -52.49 -0.39 1.08 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 15 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.10 2.04 5.82 -83.23 -0.48 1.55 16 20 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 21 H 0.12 2.90 4.25 -51.93 -0.22 2.68 16 22 H 0.04 0.95 7.04 -51.92 -0.37 0.59 16 23 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 28 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 30 H 0.04 0.98 6.21 -51.93 -0.32 0.66 16 31 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 259.69 15.07 3.91 3.91 Total: -1.00 -28.86 259.69 -8.54 -37.40 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.22 Total: 0.45 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -3.02 Total: -22.54 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.20 Total: -35.25 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.86 -8.54 -37.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.862 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds