Wall clock time and date at job start Mon Mar 30 2020 02:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47903 * 111.00140 * 2 1 4 4 C 1.54599 * 102.63190 * 149.00075 * 3 2 1 5 5 C 1.51577 * 102.98335 * 334.30826 * 4 3 2 6 6 C 1.37550 * 131.88868 * 196.14906 * 5 4 3 7 7 C 1.38308 * 120.21748 * 179.75183 * 6 5 4 8 8 C 1.38302 * 119.87991 * 0.06785 * 7 6 5 9 9 C 1.37908 * 120.26628 * 0.13036 * 8 7 6 10 10 C 1.50705 * 119.90103 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47252 * 93.47253 * 10 9 8 12 12 H 1.07993 * 120.00259 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99623 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99995 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99785 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47362 * 59.99775 * 15 13 11 17 17 H 1.48496 * 109.46884 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46908 * 299.99901 * 15 13 11 19 19 C 1.39405 * 120.19946 * 359.97438 * 9 8 7 20 20 H 1.08996 * 109.47519 * 49.91301 * 1 2 3 21 21 H 1.08998 * 109.47262 * 169.92237 * 1 2 3 22 22 H 1.09010 * 109.46700 * 289.91391 * 1 2 3 23 23 H 1.09000 * 110.77718 * 30.71237 * 3 2 1 24 24 H 1.09002 * 110.94235 * 267.35956 * 3 2 1 25 25 H 1.09001 * 110.74643 * 92.72902 * 4 3 2 26 26 H 1.09004 * 110.74575 * 215.88329 * 4 3 2 27 27 H 1.08007 * 119.82211 * 359.80515 * 6 5 4 28 28 H 1.08002 * 120.05659 * 180.09229 * 7 6 5 29 29 H 1.08000 * 119.86868 * 180.10887 * 8 7 6 30 30 H 1.09002 * 109.46859 * 213.47740 * 10 9 8 31 31 H 1.09000 * 109.46766 * 333.46912 * 10 9 8 32 32 H 0.97003 * 119.99500 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.3274 1.2330 0.7770 5 6 3.0796 0.0167 1.6469 6 6 3.7320 -0.4666 2.7572 7 6 3.2882 -1.6200 3.3782 8 6 2.1856 -2.2901 2.8802 9 6 1.5283 -1.8144 1.7651 10 6 0.3273 -2.5509 1.2297 11 6 -0.9277 -1.9607 1.8192 12 1 -0.8624 -1.1348 2.5119 13 6 -2.1595 -2.4754 1.4742 14 7 -2.2390 -3.4816 0.6311 15 14 -3.7153 -1.7434 2.2044 16 1 -3.8091 -0.3088 1.8329 17 1 -4.8985 -2.4700 1.6779 18 1 -3.6750 -1.8701 3.6834 19 6 1.9708 -0.6538 1.1321 20 1 -0.3634 0.6617 -0.7862 21 1 -0.3634 -1.0118 -0.1798 22 1 -0.3633 0.3501 0.9663 23 1 1.3196 2.0558 0.5205 24 1 2.1824 1.7277 -1.0169 25 1 4.1572 1.0556 0.0928 26 1 3.5162 2.1142 1.3901 27 1 4.5930 0.0576 3.1449 28 1 3.8015 -1.9964 4.2508 29 1 1.8381 -3.1897 3.3664 30 1 0.2979 -2.4571 0.1441 31 1 0.3961 -3.6042 1.5016 32 1 -3.1056 -3.8434 0.3881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:51 Heat of formation + Delta-G solvation = 16.284810 kcal Electronic energy + Delta-G solvation = -14619.445503 eV Core-core repulsion = 12350.972946 eV Total energy + Delta-G solvation = -2268.472557 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.56146 -37.55161 -35.92278 -33.76439 -31.39866 -29.76983 -29.22174 -26.10529 -25.01569 -23.34369 -22.10135 -20.91460 -18.49501 -17.27258 -16.90253 -16.56158 -16.43497 -15.81245 -14.69665 -14.54250 -14.35219 -14.21491 -13.70242 -13.55487 -13.19290 -12.95438 -12.80972 -12.58793 -12.49053 -12.28462 -12.10115 -11.55884 -11.50750 -11.15330 -10.63340 -10.57651 -9.37399 -8.48735 -8.14097 -6.27352 0.57304 0.67488 1.38194 1.39393 1.47649 2.39065 2.83822 3.13057 3.18050 3.73327 3.82473 4.22014 4.29146 4.34309 4.44363 4.58849 4.67685 4.74099 4.80348 4.81617 5.05202 5.08108 5.19765 5.27440 5.29348 5.47833 5.68759 5.70247 5.74865 5.92722 6.03153 6.17836 6.24357 6.47636 6.80289 7.37624 8.91715 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032628 B = 0.010257 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.939863 B = 2729.208716 C = 3179.094700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.494 5.494 3 C 0.040 3.960 4 C -0.070 4.070 5 C -0.157 4.157 6 C -0.100 4.100 7 C -0.141 4.141 8 C -0.121 4.121 9 C -0.094 4.094 10 C 0.062 3.938 11 C -0.505 4.505 12 H 0.046 0.954 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.953 3.047 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.068 3.932 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.024 0.976 23 H 0.058 0.942 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.114 0.886 30 H 0.009 0.991 31 H -0.006 1.006 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.892 9.856 2.052 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.208 5.208 3 C -0.086 4.086 4 C -0.107 4.107 5 C -0.160 4.160 6 C -0.118 4.118 7 C -0.160 4.160 8 C -0.139 4.139 9 C -0.096 4.096 10 C 0.026 3.974 11 C -0.543 4.543 12 H 0.065 0.935 13 C -0.187 4.187 14 N -0.567 5.567 15 Si 0.778 3.222 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.030 4.030 20 H 0.090 0.910 21 H 0.097 0.903 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.129 0.871 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.169 0.831 28 H 0.167 0.833 29 H 0.132 0.868 30 H 0.027 0.973 31 H 0.012 0.988 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.861 9.538 1.418 13.792 hybrid contribution -1.568 -0.046 0.720 1.726 sum 8.292 9.493 2.138 12.785 Atomic orbital electron populations 1.22795 0.85293 1.04232 0.99753 1.60495 1.09566 1.15320 1.35427 1.23427 0.95581 0.87097 1.02482 1.21281 0.97463 0.95216 0.96744 1.20974 0.97809 0.99298 0.97881 1.20489 1.00339 0.96441 0.94570 1.21227 0.97051 0.96315 1.01421 1.20931 0.96595 1.00595 0.95802 1.19958 0.97557 0.95696 0.96401 1.18138 0.90655 0.93482 0.95167 1.21091 0.90896 1.16314 1.25998 0.93534 1.25756 1.02074 0.95369 0.95548 1.70074 1.25694 1.25958 1.34982 0.85682 0.78792 0.78880 0.78862 1.19149 1.20719 1.19715 1.19846 0.97084 0.95556 0.90497 0.90966 0.90333 0.95726 0.92401 0.87112 0.88481 0.87934 0.83142 0.83308 0.86771 0.97314 0.98779 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 7.73 127.69 0.99 2.07 16 2 N -0.49 -19.47 5.30 -712.96 -3.78 -23.25 16 3 C 0.04 1.13 6.88 86.65 0.60 1.72 16 4 C -0.07 -1.76 7.02 30.67 0.22 -1.54 16 5 C -0.16 -5.27 6.25 -19.46 -0.12 -5.39 16 6 C -0.10 -2.98 10.01 22.12 0.22 -2.76 16 7 C -0.14 -4.55 10.06 22.30 0.22 -4.32 16 8 C -0.12 -4.93 9.65 22.21 0.21 -4.71 16 9 C -0.09 -4.39 5.06 -19.66 -0.10 -4.49 16 10 C 0.06 3.42 4.34 29.10 0.13 3.55 16 11 C -0.50 -28.41 6.15 25.60 0.16 -28.25 16 12 H 0.05 2.63 7.40 -2.91 -0.02 2.61 16 13 C 0.01 0.61 5.46 84.66 0.46 1.07 16 14 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 15 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 C 0.07 2.87 5.82 38.40 0.22 3.10 16 20 H 0.07 2.62 8.08 -2.39 -0.02 2.60 16 21 H 0.08 4.03 4.25 -2.39 -0.01 4.02 16 22 H 0.02 1.10 7.04 -2.38 -0.02 1.08 16 23 H 0.06 1.58 7.87 -2.39 -0.02 1.56 16 24 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 28 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 29 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 30 H 0.01 0.52 6.21 -2.39 -0.01 0.51 16 31 H -0.01 -0.36 8.06 -2.39 -0.02 -0.38 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -65.73 259.69 2.84 -62.90 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.10 Total: 9.51 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 3.21 Total: -39.96 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -3.50 Total: -78.49 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -65.73 2.84 -62.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.180 kcal (2) G-P(sol) polarization free energy of solvation -65.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds