Wall clock time and date at job start Mon Mar 30 2020 02:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34028 * 126.90222 * 2 1 4 4 O 1.34483 * 110.15495 * 179.97438 * 3 2 1 5 5 C 1.34832 * 110.88489 * 359.97438 * 4 3 2 6 6 C 1.38801 * 133.42747 * 179.97438 * 5 4 3 7 7 C 1.38521 * 119.76486 * 180.02562 * 6 5 4 8 8 O 1.35732 * 119.73249 * 180.02562 * 7 6 5 9 9 C 1.34818 * 117.00020 * 354.40886 * 8 7 6 10 10 H 1.07995 * 119.99816 * 5.05351 * 9 8 7 11 11 C 1.38624 * 119.99908 * 185.05506 * 9 8 7 12 12 N 1.31580 * 119.99969 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00020 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46895 * 90.00028 * 13 11 9 15 15 H 1.48502 * 109.47066 * 210.00089 * 13 11 9 16 16 H 1.48499 * 109.47229 * 330.00155 * 13 11 9 17 17 C 1.39370 * 120.53144 * 359.97438 * 7 6 5 18 18 C 1.36583 * 120.35026 * 0.02562 * 17 7 6 19 19 C 1.39513 * 119.80986 * 0.27416 * 18 17 7 20 20 H 1.09009 * 109.46882 * 89.98028 * 1 2 3 21 21 H 1.08996 * 109.47480 * 209.98027 * 1 2 3 22 22 H 1.09000 * 109.47365 * 329.98291 * 1 2 3 23 23 H 1.07998 * 124.92265 * 0.02562 * 3 2 1 24 24 H 1.08001 * 120.11420 * 0.02562 * 6 5 4 25 25 H 0.96998 * 120.00205 * 179.97438 * 12 11 9 26 26 H 1.08001 * 119.82806 * 179.97438 * 17 7 6 27 27 H 1.08001 * 120.09780 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3117 1.0718 0.0000 4 8 3.5995 0.6843 0.0006 5 6 3.6968 -0.6606 0.0015 6 6 4.7710 -1.5395 0.0019 7 6 4.5418 -2.9056 0.0024 8 8 5.5928 -3.7645 0.0034 9 6 6.8233 -3.2262 -0.1133 10 1 6.9448 -2.1531 -0.1198 11 6 7.9326 -4.0501 -0.2249 12 7 7.7844 -5.3575 -0.2175 13 14 9.6374 -3.3043 -0.3873 14 1 10.2246 -3.1130 0.9632 15 1 10.5028 -4.2151 -1.1789 16 1 9.5401 -1.9918 -1.0751 17 6 3.2407 -3.4052 0.0031 18 6 2.1740 -2.5523 0.0027 19 6 2.3882 -1.1737 -0.0041 20 1 -0.3633 0.0004 -1.0278 21 1 -0.3634 -0.8901 0.5135 22 1 -0.3634 0.8898 0.5141 23 1 1.9748 2.0979 0.0004 24 1 5.7820 -1.1596 0.0019 25 1 8.5605 -5.9340 -0.2960 26 1 3.0751 -4.4725 0.0031 27 1 1.1674 -2.9439 0.0036 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259992289.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:39 Heat of formation + Delta-G solvation = -4.768521 kcal Electronic energy + Delta-G solvation = -13799.415248 eV Core-core repulsion = 11296.477993 eV Total energy + Delta-G solvation = -2502.937255 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.72130 -38.59003 -35.76354 -33.33148 -32.26786 -29.78748 -28.30049 -26.74625 -25.44881 -22.49467 -21.31656 -19.62769 -18.20102 -16.97271 -16.41816 -15.68867 -15.51424 -14.55231 -13.81340 -13.60573 -13.54150 -13.28633 -12.99901 -12.66981 -12.35183 -11.87786 -11.70142 -11.23450 -11.08602 -10.75589 -10.58866 -10.43265 -9.48792 -9.17023 -8.73870 -7.85607 -7.03476 -6.53414 -4.11222 1.69858 2.22376 2.90513 3.11391 3.12592 3.17051 3.44266 3.92133 4.46721 4.98677 5.02159 5.11671 5.26422 5.31267 5.69967 5.73770 5.94195 5.97380 6.08674 6.11369 6.34023 6.55904 6.82228 7.02392 7.08933 7.10662 7.32111 7.42499 7.86220 7.92970 8.91917 9.57845 10.63697 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.052718 B = 0.007214 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.999914 B = 3880.151064 C = 4392.601431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.163 4.163 3 C -0.043 4.043 4 O -0.204 6.204 5 C 0.109 3.891 6 C -0.249 4.249 7 C 0.176 3.824 8 O -0.165 6.165 9 C -0.393 4.393 10 H 0.096 0.904 11 C 0.041 3.959 12 N -0.858 5.858 13 Si 0.943 3.057 14 H -0.272 1.272 15 H -0.276 1.276 16 H -0.266 1.266 17 C -0.182 4.182 18 C -0.035 4.035 19 C -0.216 4.216 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.193 0.807 24 H 0.136 0.864 25 H 0.272 0.728 26 H 0.126 0.874 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.981 8.220 0.117 12.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.164 4.164 3 C -0.107 4.107 4 O -0.106 6.106 5 C 0.062 3.938 6 C -0.270 4.270 7 C 0.121 3.879 8 O -0.067 6.067 9 C -0.469 4.469 10 H 0.113 0.887 11 C -0.164 4.164 12 N -0.492 5.492 13 Si 0.767 3.233 14 H -0.197 1.197 15 H -0.201 1.201 16 H -0.190 1.190 17 C -0.201 4.201 18 C -0.054 4.054 19 C -0.217 4.217 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.210 0.790 24 H 0.153 0.847 25 H 0.082 0.918 26 H 0.144 0.856 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.571 7.908 0.117 11.662 hybrid contribution 0.744 0.440 -0.076 0.868 sum -7.827 8.348 0.041 11.443 Atomic orbital electron populations 1.20084 0.89599 1.02104 1.01636 1.20982 0.95854 0.91882 1.07690 1.23321 0.80378 0.98851 1.08157 1.83931 1.27850 1.21682 1.77170 1.19315 0.95105 0.80373 0.99040 1.19680 0.97225 0.90803 1.19254 1.18910 0.88853 0.87960 0.92190 1.83997 1.13105 1.32324 1.77295 1.21417 0.80014 0.93372 1.52067 0.88680 1.25333 0.99621 0.95250 0.96181 1.70046 1.31438 1.02681 1.44998 0.85672 0.79942 0.78844 0.78804 1.19729 1.20135 1.19020 1.19961 0.89714 0.99959 1.10423 1.19761 0.97825 0.90416 0.97375 1.19403 0.92186 0.93804 1.16327 0.91765 0.91709 0.92016 0.79010 0.84689 0.91809 0.85596 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.43 36.00 0.38 -0.53 15 2 C -0.16 -2.62 6.35 -102.66 -0.65 -3.27 15 3 C -0.04 -0.67 11.89 29.25 0.35 -0.32 15 4 O -0.20 -3.97 10.58 3.75 0.04 -3.93 15 5 C 0.11 2.35 7.41 -38.50 -0.29 2.06 15 6 C -0.25 -5.84 9.18 -39.27 -0.36 -6.20 15 7 C 0.18 4.32 6.65 -39.06 -0.26 4.06 15 8 O -0.16 -4.66 9.75 0.14 0.00 -4.66 15 9 C -0.39 -10.94 9.48 30.88 0.29 -10.65 15 10 H 0.10 2.48 5.17 -52.49 -0.27 2.21 15 11 C 0.04 1.12 5.49 -17.52 -0.10 1.03 15 12 N -0.86 -24.74 13.67 55.48 0.76 -23.99 15 13 Si 0.94 20.39 29.55 -169.99 -5.02 15.36 15 14 H -0.27 -5.73 7.11 56.52 0.40 -5.32 15 15 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 17 C -0.18 -3.84 9.92 -39.76 -0.39 -4.23 15 18 C -0.04 -0.66 10.04 -39.70 -0.40 -1.06 15 19 C -0.22 -4.23 6.38 -105.10 -0.67 -4.90 15 20 H 0.06 0.68 8.14 -51.92 -0.42 0.25 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.19 2.05 8.06 -52.49 -0.42 1.63 15 24 H 0.14 3.16 5.60 -52.49 -0.29 2.87 15 25 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 26 H 0.13 2.46 8.06 -52.49 -0.42 2.04 15 27 H 0.12 1.79 8.06 -52.49 -0.42 1.37 15 LS Contribution 245.78 15.07 3.70 3.70 Total: -1.00 -30.91 245.78 -4.86 -35.77 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -2.24 Total: 1.75 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -2.10 Total: -24.01 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.76 Total: -23.99 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.04 Total: -8.59 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.91 -4.86 -35.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992289.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.002 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds